Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00313 ATGGAGCAGTTGAAATTGGCTACAAATTCTGACGCTAAAGAGGATAACCCTTTGGGGAACAAGCCAAAAAATAGCAATGCACTTGAGTCTTCTGACAGTCTGAGAAATAGAAAGGTATCAGCTCGATGGGATCCAGATGGAGCATGTCGGCCTATAATTGAAGAAGCACCTGTTTTTTATCCGACTATCGAAGAATTTGAAGACACACTCAGTTACATAGCAAAGATACGACTCGTAGCTGAACCCTATGGCATATGTAGAATTGTTCCTCCAGCTTGCTGGACTCCACCCTGTCCTCTTAAGGAGAAAGATCTGTGGGAAAATGCTGAATTTCCCACCCGTATTCAGCAAATTGATTTGCTTCAAAATAGGGAACCAATGAGGAAAAAATGTAGGGGAAGGAAGCGAAAACGTAGAAGGCACTCCAGAACAGGCACATGTAGGAGGAAGCCTGCTAATGCAGCTTCTCAATCTAAGAATGCTTCTGATTCTGAGGAGAAATTTGGGTTCCAATCAGGATCAGACTTCACGCTTAAAGACTTTCAGCAGTATGCTAATTTTTTTAAGGAATGCTATTTTGGGTTGAAAGATGCCAATAGAGACAGAACAGATAGCAACAGTAACCATCAGAAGACATGGGAACCCTCTGAGGAAGAAATTGAAGGTGAATACTGGCGAATAATTGAGCAACCAAGTGATGAGGTTGAGGTGTATTATGGAGCTGACTTGGAAACTGGAGCACTTGGAAGTGGTTTTCCTAAGGCATCATCCATTACTACGGGTGACTCCACTCAATATGCTCTGTCTGGTTGGAATCTGAACAATTTCCCCCGACTGCCAGGTTCTGTACTAAGCTACGAAGGAAGCGACATATCAGGAGTTCTAGTGCCATGGCTGTATGTTGGCATGTGTTTTTCATCATTTTGCTGGCATGTTGAGGACCATCACCTTTATTCATTAAACTATTTGCACTGGGGTGACCCTAAAGTATGGTATGGAGTACCTGGAAGCCATGCACCAGAGTTGGAAAATGCAATGAGGAAGCACTTGCCTGATTTATTTGAGGAACAACCAAATCTACTAAATGAACTGGTTACCCAGTTTTCTCCTTCAATTCTTAAATCTGAGGGAGTGCCTGTGTATCGCACAGTTCAGCATTCTGGAGAATTTGTTATTACCTTTCCAAGGGCATATCATTCAGGCTTCAATTGTGGCTTCAACTGTGCAGAGGCAGTGAATGTGGCTCCTGTTGATTGGTTAACGCATGGACAGAATGCTGTCGAGCTTTACAGTTTACAATGTCGTAAGACATCGTTGTCCCATGACAAGCTGTTATTTGGATCAGCACTGGAAGCTGTACGGGCAATTACAGAACTAGCTCTTGGAAAGGAATCTCCAAAAAATTTGAAATGGAGAAGTGTCTGTGGGAAAGATGGGGATCTTACCAAGGCAGTTAAGGCAAGGATAAAGATGGAAGATGAAAGGCTAGATTGTCTTCCAACTCATCTTAAGTTGCTCAAGATGAACAGTGATTTTGATTTGTACACGGAAAGAGAATGCTTCTCTTGCTTCTATGACTTGCACCTATCTGCTGTGGGTTGTGAGTGCTCTCCTGACAGATATTCTTGTCTTAAACATGGTAATTTCTTCTGCTCATGTGCAATGGAGAAAAGATTTGTTCTGCTTCGATATACTAGAAATGAGCTAAATAAACTGCTTGAAGCATTAGAAGGAGAATCACATGCTATTAAGGTATGGGCAAATAAAAGCTGTGGAATGGTTTCTGCCAAGGCCAATGAAGTTTGCATAGATAAATCAGGTGTTGAGAAAGAGATGTACAAAACCAAGAATTGTGAAGAAATGGATAGCTTAACTGGTTGTGAAGGAACCAAGGATAGGTCAAATTTAAACGCACCTAGTAGTCCTAATAGTCATATTACTTCTGAGATAGTGCAGTCTGAGTCTCACCCTGTAACTTCTAGCGCAGCATATGACAGTATAGATAGTCATAATGACAATAATAGTGATAAAAAGTTTGTCATAGACAAGGAAGATAAAATGGATCAGGATGGTTATCTGGATTTAAATCTTGATGTTTTCTCTGGTGAAAATGAAAATCATATGCTGGATATTGCTGATAACAATCACAACGAAGGTGTTTCAGTAGAGGAAAAAGTATGCTGTTCAGAGGCCAAAAAGGAAGAAGAAAGCATGGAACTTGGTGATGAGGGTAACTTGTCAAACTCATTTTCCGTACTACACACAGATTTCTCGTCAAGTTCAATGGGAGTTCACAATTATTGTACATTTGATGGTGGAAAATTTGAGCTGGATCTACAAACAAATACTGGAAAGCTTCACAACAATCTATTTAAAAATGGAGCCATAGACACTACAGTGGATTTGACAGATGAAAGCTGCTTGGTGCGAATGTTTGGTACTTCCGTTGAGCCTGTCAGTTTTGGATCTGTTGTTCACGGAAAGCTGTGGTGCAGTAAGCATGCAATATATCCAAAGGGATTCAAGAGTCGCGTTCTCTTCTTTAGCATTCTGGATCCACGGAAAATCTGTAGCTATATTTCTGAAGTCATTGATGCTGGATTTCTTGGACCTCTTTTCAAGGTAACCATGGAAGAATGTCCTAGTGAGGCTTTCACCGATACCTCATTAGATAAGTGCTGGGAATCAGTTCTGAAGAGATTACATCATGAAATCATGAGGCGAAGGAGTCTAGGTGAACTAGAACTTCCTACCTTAGAGCTCCTGAAAAGCATTAATGGGCATAGAATGTCTGGCTTCTTTTTACCATCTATTATTCAGGCCATCGAAGTTCAAGATCCCTGTCATATGTGTGTAGAGTACTGGAATCACAAAGTTTCCCCTTCAGGCAGTGTTGTTGATAACTTCACCTACGGTTCCAAAAGCCCTTTCAGTAATATCAATACCAAAATTTTTGGTATCAATTTCATTAAGCGTAGCTTCCTTGAAGAGATGAAACCAATAGTACAAAGGGCAAGTCATGATGAGTTAAGCGCACTTCACAAGTTACTCAGCTCTGATGCCCTATGCTGTGAGTGGACAGTGACATTGATGGCACTGATAGATGAGATCCGGAAAGCTTGTCGATGA 3129 0.4104 MEQLKLATNSDAKEDNPLGNKPKNSNALESSDSLRNRKVSARWDPDGACRPIIEEAPVFYPTIEEFEDTLSYIAKIRLVAEPYGICRIVPPACWTPPCPLKEKDLWENAEFPTRIQQIDLLQNREPMRKKCRGRKRKRRRHSRTGTCRRKPANAASQSKNASDSEEKFGFQSGSDFTLKDFQQYANFFKECYFGLKDANRDRTDSNSNHQKTWEPSEEEIEGEYWRIIEQPSDEVEVYYGADLETGALGSGFPKASSITTGDSTQYALSGWNLNNFPRLPGSVLSYEGSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKVWYGVPGSHAPELENAMRKHLPDLFEEQPNLLNELVTQFSPSILKSEGVPVYRTVQHSGEFVITFPRAYHSGFNCGFNCAEAVNVAPVDWLTHGQNAVELYSLQCRKTSLSHDKLLFGSALEAVRAITELALGKESPKNLKWRSVCGKDGDLTKAVKARIKMEDERLDCLPTHLKLLKMNSDFDLYTERECFSCFYDLHLSAVGCECSPDRYSCLKHGNFFCSCAMEKRFVLLRYTRNELNKLLEALEGESHAIKVWANKSCGMVSAKANEVCIDKSGVEKEMYKTKNCEEMDSLTGCEGTKDRSNLNAPSSPNSHITSEIVQSESHPVTSSAAYDSIDSHNDNNSDKKFVIDKEDKMDQDGYLDLNLDVFSGENENHMLDIADNNHNEGVSVEEKVCCSEAKKEEESMELGDEGNLSNSFSVLHTDFSSSSMGVHNYCTFDGGKFELDLQTNTGKLHNNLFKNGAIDTTVDLTDESCLVRMFGTSVEPVSFGSVVHGKLWCSKHAIYPKGFKSRVLFFSILDPRKICSYISEVIDAGFLGPLFKVTMEECPSEAFTDTSLDKCWESVLKRLHHEIMRRRSLGELELPTLELLKSINGHRMSGFFLPSIIQAIEVQDPCHMCVEYWNHKVSPSGSVVDNFTYGSKSPFSNINTKIFGINFIKRSFLEEMKPIVQRASHDELSALHKLLSSDALCCEWTVTLMALIDEIRKACR* 1043
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00313 1042 Pfam C5HC2 zinc finger 520 572 IPR004198 -
Lapu9g00313 1042 MobiDBLite consensus disorder prediction 129 167 - -
Lapu9g00313 1042 MobiDBLite consensus disorder prediction 13 34 - -
Lapu9g00313 1042 MobiDBLite consensus disorder prediction 129 147 - -
Lapu9g00313 1042 SUPERFAMILY Clavaminate synthase-like 266 450 - -
Lapu9g00313 1042 ProSiteProfiles JmjC domain profile. 265 431 IPR003347 -
Lapu9g00313 1042 SMART fyrc_3 872 964 IPR003889 GO:0005634
Lapu9g00313 1042 MobiDBLite consensus disorder prediction 629 669 - -
Lapu9g00313 1042 Pfam F/Y rich C-terminus 870 958 IPR003889 GO:0005634
Lapu9g00313 1042 Pfam F/Y-rich N-terminus 819 863 IPR003888 GO:0005634
Lapu9g00313 1042 Gene3D - 813 952 - -
Lapu9g00313 1042 ProSiteProfiles FYR domain FYRC motif profile. 868 958 IPR003889 GO:0005634
Lapu9g00313 1042 Pfam JmjC domain, hydroxylase 298 414 IPR003347 -
Lapu9g00313 1042 MobiDBLite consensus disorder prediction 149 167 - -
Lapu9g00313 1042 ProSiteProfiles FYR domain FYRN motif profile. 808 866 IPR003888 GO:0005634
Lapu9g00313 1042 SMART fyrn_3 822 866 IPR003888 GO:0005634
Lapu9g00313 1042 SMART JmjN_1 55 96 IPR003349 -
Lapu9g00313 1042 Pfam jmjN domain 57 90 IPR003349 -
Lapu9g00313 1042 PANTHER LYSINE-SPECIFIC DEMETHYLASE 52 741 - -
Lapu9g00313 1042 FunFam Putative lysine-specific demethylase JMJ16 814 952 - -
Lapu9g00313 1042 MobiDBLite consensus disorder prediction 629 677 - -
Lapu9g00313 1042 Gene3D Cupin 41 415 - -
Lapu9g00313 1042 ProSiteProfiles JmjN domain profile. 56 97 IPR003349 -
Lapu9g00313 1042 SMART cupin_9 265 431 IPR003347 -
Lapu9g00313 1042 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00313 Lapu-Chr9 3164185 3172534 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g00313 812 990 JUMONJI Transcription Factor Family AT1G30810 48.045 1.68e-47 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Lapu9g00313 JmjC 2.2e-47 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00313 K11446 - gmx:100801775 1763.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g00313 9 3164185 3172534 Lapu9g00313 9 3164185 3172534 ECH