Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00311 ATGAGGAGCCAACTTGTGTGTAATGGGTGTAGGAACATCTTGGTTTACCCTAGAGGAGCAACCAATGTTTGCTGTGCATTGTGCAACACCGTTTCCTCTGTTCCTCCTCCTGGAATGGAAATGTCACAACTTTATTGTGGAGGCTGTAGGACATTGCTAATGTACGCACATGGTGCTACAAGTGTGAGATGTTCCTGCTGTCACACTATTAACCTTGTTCCCGAATCTTATCAAGTCAACCATATCCATTGTGTGAACTGCCGGACCACACTCATGTATCCTTTTGGAGCGCCCTCAGTCAAATGTGCAATTTGTCACTATATTACTAATGTCAGTATGACCAATGGAAGGATTCGAATTCCTGTACAGAGACCAAATGGAACAGTATCTTCTACTTCATCATCAATGCCTAATTCTCAGAGCCAAACTGTTGTAGTAGAAAATCCTATGTCTGTTGATTCGAATGGGAAATTGGTAACTACTATTGTTTTTCTTTTTTGGTTAGTTTGGATGCATATTTGA 522 0.4119 MRSQLVCNGCRNILVYPRGATNVCCALCNTVSSVPPPGMEMSQLYCGGCRTLLMYAHGATSVRCSCCHTINLVPESYQVNHIHCVNCRTTLMYPFGAPSVKCAICHYITNVSMTNGRIRIPVQRPNGTVSSTSSSMPNSQSQTVVVENPMSVDSNGKLVTTIVFLFWLVWMHI* 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00311 173 Pfam LSD1 zinc finger 84 108 IPR005735 -
Lapu9g00311 173 Pfam LSD1 zinc finger 46 70 IPR005735 -
Lapu9g00311 173 Pfam LSD1 zinc finger 7 31 IPR005735 -
Lapu9g00311 173 NCBIfam zinc finger domain, LSD1 subclass 43 73 IPR005735 -
Lapu9g00311 173 NCBIfam zinc finger domain, LSD1 subclass 81 110 IPR005735 -
Lapu9g00311 173 NCBIfam zinc finger domain, LSD1 subclass 4 32 IPR005735 -
Lapu9g00311 173 PANTHER PROTEIN LSD1 3 163 IPR040319 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00311 Lapu-Chr9 3144343 3152628 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Lapu9g00311 zf-LSD1 1.7e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00311 - K12191 gmx:100776644 280.796