Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00283 ATGGAGTTTTTGGGCACAAGAGAAGCTGTTCAGACTAGTGTCTTATCTATACGATGGAAGAACCTTTGGAAAGGCCTCACCACTTTATCTTTCACACCCTTCTTCACTGGAATTCGCAAATACAACAACTATGTCTCTCAGGTTCTCTTTAATCGAGATCATTCTATTTCCCTACACAACCTTCATTTGACAGTCTTCCATTCCACTGCACCAAAACTCCTCAACAAAATCCTCAAATATGCTGCATTGCACCATCTCCACAACTTGTCACTCTCTTTAGATTTCAAATTTAAAGAAATATCCAATTCTTTTCTTCCCCTCATTTTCAATTGTCAATCTTTAACTTCTCTTGAGATTTCCATTAGTTACTCTTCCTCTTATTTGAAACTTCCACCATCTCTTTTGCTAAGATCTTTGAAAACATTGCATCTCTCCAATGTTACTTTCACAGAAGATGACAATCACTGTGCTGAGCCTTTCTCAACATGCACTTCGTTGACCACTTTGGTCCTTAAGCATTCTATGCATAACCATTCAGCACGAACTCTTTGCATATCTAGTCCTACCCTTTCTGTTTTGAAACTAGAAAACATAGTTCACTGGCAATCTTTTAAACCTAAAATTGTGCTTTCTACTCCAAATCTCAGTTCGATCACACTTGGGAATAGTCGTTTGTACATGCCTTATGAACTTTCATGTACGTGTCCTCTTTCTTTCCTTCAAGAAGTAAGAATTGACAACCGTGTTATGGATTCTTCTATCGTCTTAGAGTGGTTAGGATTGTTCTCTAATACGAGAATGTTGACACTCTCTTCTTATACCTTCAAAATACTATTAATGAAAATGGGTCGTCCAAAATTAATCTTAAAACCCATCACAAATAGGAGAGATCGTGACTTGGCTTTCACGAAGAGAAGGAAGGGACTAATGAAGAACATATCTGAATTTTGTAGTGTGTGTGGAGTGAAAGCTTGTTTGATTATGTATGATGGCAATGGTGATTCTCCACCATTGACTTGGCCCCAAGACCCCATTGAGATGCACTCCATCATCCAAAGGTATGAGAGTATGATGTGTGAGAAAATTCCTAAAATCTTTGATCTCAACAACTTTTTTGAGATTAGGAAGAACATGGTTGACAGTGAGATTTCCAAAGTTCAGAAAGAGATTATTGAGATCAAATATCCAACTTGGCATCCATGCTTCAACAATCTTGGTGCTGAAGAATTGAAGAGTTTCATTGTTAGTTTGGACATGAAGCTTGAAGCTTGTAATCAACGAACTAACATGTTCAAATGCAAGAAACAAGATGAAGCAGAGTTCAATTTCCAGCAATGCATGATTCAACCAGAGTGTGTTGGTCCAAACCCAAACCAACTGAGTTTTATGCAGGATATCTTCCAAAACCAATTTCTTCTCGCTCCATTGAAGCCACTTGATGTTAATCTTGAACCATCTTTCCTACACAATTTTGAAAAAGGTTCTACTTCTCAATCCCAAAAGCTTCTCTTTGATCCAAATCTTGTGCAATTGAAGGAAGAGACCAAAGGGGTGGTGGATCCAACCCTTGAAGTTGTTCTGCGACAAGAATATGCATGCCAAATTGCTCTTTCTAAAAGTTCTTCAAATAAGCTTGATGTGCCGTGTGATCTACTTGATGAGTCTCTGAATTTTTTTGATCAACTTGGTGAAATACAAAGTTTGAATCAACATTGGAGCAATGATCAACATGAAGCACATGTGATTGGAGGAAGTAGCACAACATTGAATGGTGGTGTTACTACTTTTGATACAAATTTTCATGGAAACCAATACAACTCAGAGCCTTCTCTTCGCAATTACAATGGAGTTATGCAAACCTATAACCATGATGCATCATGGAGGAATATTGGTTTTCAATAA 1902 0.3764 MEFLGTREAVQTSVLSIRWKNLWKGLTTLSFTPFFTGIRKYNNYVSQVLFNRDHSISLHNLHLTVFHSTAPKLLNKILKYAALHHLHNLSLSLDFKFKEISNSFLPLIFNCQSLTSLEISISYSSSYLKLPPSLLLRSLKTLHLSNVTFTEDDNHCAEPFSTCTSLTTLVLKHSMHNHSARTLCISSPTLSVLKLENIVHWQSFKPKIVLSTPNLSSITLGNSRLYMPYELSCTCPLSFLQEVRIDNRVMDSSIVLEWLGLFSNTRMLTLSSYTFKILLMKMGRPKLILKPITNRRDRDLAFTKRRKGLMKNISEFCSVCGVKACLIMYDGNGDSPPLTWPQDPIEMHSIIQRYESMMCEKIPKIFDLNNFFEIRKNMVDSEISKVQKEIIEIKYPTWHPCFNNLGAEELKSFIVSLDMKLEACNQRTNMFKCKKQDEAEFNFQQCMIQPECVGPNPNQLSFMQDIFQNQFLLAPLKPLDVNLEPSFLHNFEKGSTSQSQKLLFDPNLVQLKEETKGVVDPTLEVVLRQEYACQIALSKSSSNKLDVPCDLLDESLNFFDQLGEIQSLNQHWSNDQHEAHVIGGSSTTLNGGVTTFDTNFHGNQYNSEPSLRNYNGVMQTYNHDASWRNIGFQ* 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00283 633 SMART madsneu2 282 341 IPR002100 GO:0003677|GO:0046983
Lapu9g00283 633 SUPERFAMILY SRF-like 282 359 IPR036879 GO:0003677|GO:0046983
Lapu9g00283 633 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 291 333 IPR002100 GO:0003677|GO:0046983
Lapu9g00283 633 Gene3D - 304 366 IPR036879 GO:0003677|GO:0046983
Lapu9g00283 633 Gene3D Ribonuclease Inhibitor 11 303 IPR032675 -
Lapu9g00283 633 PANTHER F-BOX/RNI SUPERFAMILY PROTEIN-RELATED 2 278 - -
Lapu9g00283 633 CDD MADS_SRF_like 283 357 IPR033897 GO:0000981|GO:0000987|GO:0045944
Lapu9g00283 633 ProSiteProfiles MADS-box domain profile. 282 342 IPR002100 GO:0003677|GO:0046983
Lapu9g00283 633 SUPERFAMILY L domain-like 22 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00283 Lapu-Chr9 2809455 2814999 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g00283 282 431 Type I MADS-box Gene Family AT5G55690 29.032 4.15e-15 74.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lapu9g00283 SRF-TF 4.3e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00283 - - vra:106760100 558.14