Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00280 ATGAGGCAGGCTTTTGATCCTTCTTCTTTGGGTCCTTCCAAGATTCCATCTATAAAAATACCTGGAAAATCGGGGAATGGTGCGTGGGAGGCTTTGTCTGGATCTGATTCATACCATGCTTCATCTGATGCTAGTCTATTTTCTAGCTCATTACCTGTACTTCCGCATGAAAAATTAAACTTGAATGAAACTGAAAATGGTTATCAATCTATTGATGACATCTCATCTGGATTTAAGAAGCTCCATCAAGATGCAGAGGGAGATGGTTCACTCGAAGATGGTGATACTCATGCTATTGGACCCGTGCTTCCTGATGATGAGGAGGAGCTTTTAGCTGGCATAATGGATGATTTTGATCTAAGTGGTTTGCCTGGATCCCTTGAGGACTTGGAAGAGTATGATCTGTTTGGTAGTGGTGGTGGAATGGAACTAGAAACTGATCAGCAGGAAAGTCTCGCTGTGGGTATTTCTAAGTTAAGCTTTGCCGATAGTACTGTTGGCAATGGTTTGCCTCATTATTCTTTTCCGAATGGTGTTGGAACTGTTGCTGGAGAACATCCATATGGAGAGCATCCTTCTCGAACGCTATTTGTTCGTAATATTAACAGTAATGTGGAGGACTCGGAGCTGAGAGCTCTTTTTGAGCTATATGGTGATATTAGAACCCTGTATACTGCATGCAAACATCGGGGATTTGTAATGATATCCTATTATGACATCCGTGCTGCTCGAACAGCTATGAGAGCATTACAAAACAAACCTCTGAGGCGCAGGAAACTAGATATTCACTTCTCAATACCAAAGGATAATCCATCAGACAAGGATATAAACCAAGGAACATTGGTAGTTTTCAATCTGGATCCATCTGTTTCAAATGAAGACCTCCGCCAAATATTTGGGGCTTATGGAGAGGTCAAAGAGATAAGGGAAACACCTCACAAGAGGCATCACAAGTTTATTGAATTTTATGATGTCAGGGCTGCAGAAGCAGCTCTTAAATCATTGAACAGGAGTGACATAGCTGGTAAACGCATAAAGCTTGAACCTAGTCGGCCTGGAGGAGCTCGTAGAAATTTGATGCTCCAACTGAATCAAGAACTTGACCAAGATGAATCTCGGAGTTTCCGATATCAAGTGGGTTCACCTGTAGCTAACTCTCCTCCAGGTAACTGGTTACAGTTCAATAGCCCTGTTGAACAGAATTCAATGCAAAGTATCAATCATTCTCCTGGTTCTAGAATCCTGAGCCCAACAACAGGAAATCATTTACCTGGATTAGCTTCAATTTTACAACCACAAGTATCTAACACTGTGAAGTCTGCTGCTATTGGCAATGACTTGGGAAGGAACAGTCAAGCAGAGCAAATATTTACTGGTTTGAATTCTTCACAAGGAGCTAGTTTTCAATCACATTCACTTCCAGAGCCAAAATTCAGCCAGTATCGTGGAGCATTGCCCTCCTTTGGTCCATCAACATCAAATGGATCCTCTGTGGAAACTTTGTCAGGGCCACAGTTTCTATGGGGAAGCCCAACCCTCTACTCAGAGCATACCAAACCTTCAGCTTGGCCAAGATCATCTGTGGGGCACCCATTTACATCCAATGGAAAGAGCCATGCCTTCCCATTTTCTAGTCAGAATAGCTCTTTTGTTGGTTCATCCCAGCATCATCACAATCATCACGTTGGCTCTGCCCCATCAGGTTTGCCTTTTGAGAGGCACTTTGGTTTCCATCCCGAGTCATCCGAAACTTCATTCATGAATAATGTTGGTTATGGAGGCATGAGTCTAGGGCACACTGATGGAAATTACATGGTTAATGTGGGTGGGTCTGTTAACGCTAACATCACTATCCCAAGAAATATATCTGATAATGGTTCATCAAACTTCAGAATGAGATCTCCAAGGCTAAGCCCCGTGTACTTGGGAAATGGTCCTTATCCAGGACTTTTACCTACCACCTTGGAGGGTTTGGCTGACCGTGCTAGGAGTAGATGGATAGAGAACAATGTGGGCCAGGCTGATAACAAGAAGCAATTTCAGCTCGATTTGGATAAAATTAAAAATGGTGAAGATACAAGGACTACATTAATGATAAAGAATATTCCAAACAAATACACCTCAAAAATGTTATTAGCTGCCATTGATGAAAATCACAGGGGTACTTATGATTTTCTATATCTGCCAATTGACTTTAAGAATAAATGCAACGTGGGCTATGCATTTATCAATATGTTGTCACCCTCTCTTATTATTCCATTCTACGAGGTTCTTATGGGAATATCTTTTGCTATTTTTTTTTTGCATGTTTCTGTTATTTTACTGAGTGAAAATTTTCTACAAATATGCTTCACGATATATTCCCCTTCGTTAAATGGTGTATTATTGGCAACATGGTTGATTTTACAGACATTCAACGGGAAGAAATGGGAGAAATTTAATAGTGAAAAAGTTGCTTCCTTGGCATATGCTCGAATTCAAGGAAAGTCTGCCCTAGTGAGCCACTTTCAAAATTCAAGTTTAATGAATGAAGATAAGCGATGTCGCCCTATTCTTTTCCACTCAGAGGGTTCTGAAGCTGGTGATCTGATTGTACAAGAGCATCTTCCCTCCAACCCCAACAATCTAAACATTCAGGCACTAAGGTCAAGTGAGTTACATTCAAGTGATTTTGCTGGGAGCCCTCCAAACGATGGCCTTTCTGCAAGCTTGGATGCAAAATGA 2724 0.4134 MRQAFDPSSLGPSKIPSIKIPGKSGNGAWEALSGSDSYHASSDASLFSSSLPVLPHEKLNLNETENGYQSIDDISSGFKKLHQDAEGDGSLEDGDTHAIGPVLPDDEEELLAGIMDDFDLSGLPGSLEDLEEYDLFGSGGGMELETDQQESLAVGISKLSFADSTVGNGLPHYSFPNGVGTVAGEHPYGEHPSRTLFVRNINSNVEDSELRALFELYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDINQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGARRNLMLQLNQELDQDESRSFRYQVGSPVANSPPGNWLQFNSPVEQNSMQSINHSPGSRILSPTTGNHLPGLASILQPQVSNTVKSAAIGNDLGRNSQAEQIFTGLNSSQGASFQSHSLPEPKFSQYRGALPSFGPSTSNGSSVETLSGPQFLWGSPTLYSEHTKPSAWPRSSVGHPFTSNGKSHAFPFSSQNSSFVGSSQHHHNHHVGSAPSGLPFERHFGFHPESSETSFMNNVGYGGMSLGHTDGNYMVNVGGSVNANITIPRNISDNGSSNFRMRSPRLSPVYLGNGPYPGLLPTTLEGLADRARSRWIENNVGQADNKKQFQLDLDKIKNGEDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMLSPSLIIPFYEVLMGISFAIFFLHVSVILLSENFLQICFTIYSPSLNGVLLATWLILQTFNGKKWEKFNSEKVASLAYARIQGKSALVSHFQNSSLMNEDKRCRPILFHSEGSEAGDLIVQEHLPSNPNNLNIQALRSSELHSSDFAGSPPNDGLSASLDAK* 908
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00280 907 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 194 267 IPR000504 GO:0003723
Lapu9g00280 907 FunFam Protein MEI2-like 1 278 373 - -
Lapu9g00280 907 MobiDBLite consensus disorder prediction 543 561 - -
Lapu9g00280 907 Gene3D - 183 277 IPR012677 -
Lapu9g00280 907 MobiDBLite consensus disorder prediction 887 907 - -
Lapu9g00280 907 SUPERFAMILY RNA-binding domain, RBD 696 763 IPR035979 GO:0003676
Lapu9g00280 907 SMART rrm1_1 280 348 IPR000504 GO:0003723
Lapu9g00280 907 SMART rrm1_1 195 263 IPR000504 GO:0003723
Lapu9g00280 907 SMART rrm1_1 696 771 IPR000504 GO:0003723
Lapu9g00280 907 Pfam RNA recognition motif 2 694 766 IPR007201 -
Lapu9g00280 907 Pfam RNA recognition motif 2 801 837 IPR007201 -
Lapu9g00280 907 CDD RRM2_MEI2_like 278 348 - -
Lapu9g00280 907 CDD RRM3_MEI2_like 697 829 IPR034454 -
Lapu9g00280 907 MobiDBLite consensus disorder prediction 543 565 - -
Lapu9g00280 907 SUPERFAMILY RNA-binding domain, RBD 191 354 IPR035979 GO:0003676
Lapu9g00280 907 MobiDBLite consensus disorder prediction 81 101 - -
Lapu9g00280 907 MobiDBLite consensus disorder prediction 1 43 - -
Lapu9g00280 907 CDD RRM1_MEI2_like 193 269 IPR034453 -
Lapu9g00280 907 PANTHER RNA RECOGNITION MOTIF-CONTAINING 803 859 - -
Lapu9g00280 907 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 196 260 IPR000504 GO:0003723
Lapu9g00280 907 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 281 346 IPR000504 GO:0003723
Lapu9g00280 907 Gene3D - 278 377 IPR012677 -
Lapu9g00280 907 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 279 352 IPR000504 GO:0003723
Lapu9g00280 907 FunFam MEI2-like protein 5 isoform 2 183 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00280 Lapu-Chr9 2756399 2763001 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g00280 189 387 Eukaryotic Initiation Factors Gene Family AT1G71770 25.561 3.28e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00280 - - gmx:100800877 1577.76