Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00275 ATGACGTCACGTTCGGGTCAGGGCAGCAGCGGGGGTGGGAGCAGCAGGACCCGTGTGGGGAAGTACGAGTTGGGTCGGACCCTGGGCGAGGGCAATTTCGCCAAGGTAAAGTTCGCGAGGCACGTGGAAAGCAGAGAGAACGTCGCCATCAAGATTCTCGACAAGGAGAAAGTTCTCAAACACAAAATGATTGACCAGATTAAACGAGAAATATCAACAATGAAGCTTATTAGACACCCAAATGTCATACGTATGTATGAGGTAATGGCTAGCAAAACAAAGATATACATTGTACTGGAATTTGTGACTGGTGGGGAGCTGTTTGATAAAATTGCACGCAGCGGGAGGTTGAAAGAAGATGAAGCAAGAAAATATTTTCAACAGCTTATATGTGCTGTGGATTACTGCCATAGTAGAGGTGTTTTTCATAGAGACCTAAAGCCTGAGAATTTGTTGCTGGATGCTAATGGAGTGCTTAAAGTATCAGATTTTGGATTGAGTGCATTGCCTCAACAAGTTCGTGAAGACGGGCTACTTCACACAACATGCGGTACGCCAAATTATGTTGCTCCAGAGGTGATTCACAACAAAGGTTATGATGGTGCAAAGGCAGATCTATGGTCATGTGGTGTTATTCTCTTTGTTTTAATGGCAGGCTATTTGCCCTTTGAAGAAACCAATCTAACGGCTTTATATAAAAAGATTTACAAGGCTGAGTTCACGTGTCCTCCATGGTTCTCTTCAAGTGCAAAGAAACTAATCAACAGAATACTTGATCCCAATCCTGCCACTAGGATTACGATTGCTGAAGTTGTTGAGAATGATTGGTTCAAGAAGGGATATAAACCTCCGGTATTTGAACAGGCTAGTGTTAGTCTCGATGATGTAAATTCTATTTTCAGCGAATCTTTGGATTCGCAAAATCTTGTCGTTGAGAGGCGTGAAGAGGGGCATGTGGCACCAGTGACAATGAATGCCTTTGAGCTTATATCTAAATCTCAAGGCCTCAACCTTAGTAGTCTATTTGAGAAGCAAATGGGACTTGTTAAAAGAGAAACACGATTCACATCGAAATGTTCAGCAGATGAAATAATTTCAAAAATTGAGCAAGCTGCAGGACCCCTGGGCTTTGATGTTAAGAAGAACAACTGTAAGTTAAAGATTCAAGGGGAAAAGACTGGACGGAAAGGTCATCTATCTGTAGCAACTGAGATCTTGGAGGTAGCCCCTTCGCTATACATGGTTGAGCTGCGTAAGTCTGAAGGAGATACTCTGGAATTTCACAAGTTCTACAAGAATCTTGCTACTGGGCTGAAAGATATTGTTTGGAAAGCAGACCCTATCGATGAAGGAAAAGATGGTGCCAATCCATCAAAATAA 1380 0.4254 MTSRSGQGSSGGGSSRTRVGKYELGRTLGEGNFAKVKFARHVESRENVAIKILDKEKVLKHKMIDQIKREISTMKLIRHPNVIRMYEVMASKTKIYIVLEFVTGGELFDKIARSGRLKEDEARKYFQQLICAVDYCHSRGVFHRDLKPENLLLDANGVLKVSDFGLSALPQQVREDGLLHTTCGTPNYVAPEVIHNKGYDGAKADLWSCGVILFVLMAGYLPFEETNLTALYKKIYKAEFTCPPWFSSSAKKLINRILDPNPATRITIAEVVENDWFKKGYKPPVFEQASVSLDDVNSIFSESLDSQNLVVERREEGHVAPVTMNAFELISKSQGLNLSSLFEKQMGLVKRETRFTSKCSADEIISKIEQAAGPLGFDVKKNNCKLKIQGEKTGRKGHLSVATEILEVAPSLYMVELRKSEGDTLEFHKFYKNLATGLKDIVWKADPIDEGKDGANPSK* 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00275 459 FunFam Non-specific serine/threonine protein kinase 13 101 - -
Lapu9g00275 459 MobiDBLite consensus disorder prediction 1 20 - -
Lapu9g00275 459 FunFam Non-specific serine/threonine protein kinase 15 318 - -
Lapu9g00275 459 SMART serkin_6 22 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu9g00275 459 FunFam Non-specific serine/threonine protein kinase 318 444 - -
Lapu9g00275 459 Pfam NAF domain 321 381 IPR004041 GO:0007165
Lapu9g00275 459 SUPERFAMILY Protein kinase-like (PK-like) 19 301 IPR011009 -
Lapu9g00275 459 ProSiteProfiles Protein kinase domain profile. 22 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu9g00275 459 ProSitePatterns Serine/Threonine protein kinases active-site signature. 141 153 IPR008271 GO:0004672|GO:0006468
Lapu9g00275 459 MobiDBLite consensus disorder prediction 1 16 - -
Lapu9g00275 459 Pfam Protein kinase domain 22 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu9g00275 459 ProSiteProfiles NAF domain profile. 319 343 IPR018451 GO:0007165
Lapu9g00275 459 ProSitePatterns Protein kinases ATP-binding region signature. 28 51 IPR017441 GO:0005524
Lapu9g00275 459 CDD STKc_SnRK3 21 276 - -
Lapu9g00275 459 Gene3D Transferase(Phosphotransferase) domain 1 102 284 - -
Lapu9g00275 459 CDD CIPK_C 325 440 - -
Lapu9g00275 459 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 17 429 - -
Lapu9g00275 459 Gene3D Kinase associated domain 1, KA1 319 444 - -
Lapu9g00275 459 Gene3D Phosphorylase Kinase; domain 1 12 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00275 Lapu-Chr9 2709184 2720813 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g00275 5 450 CBL-interacting serine-threonine protein kinases AT1G01140 68.584 0.0 651
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Lapu9g00275 Pkinase 3.3e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00275 - - gmx:100788746 863.218