Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00265 ATGGCGAGGCACTCTGGTGTTCCGTTTCTTGGATCAGAAGTTAGCTATAAGGTCAAAAAAACTGCTCTACTAACGTTTGAGACTGCCCTACAATGCATGAAGTCTGGACTGAATTTCCAGAATCCCCACTTCCACCTGCTTGAATTGAAACAAACAAGGGAAGCTGTTGTTGGATGGCGAAAACTTGGAAAAGAGCTTGATTTGAATCAATTTGCGGCCAACCCAACTCATACTTCAAATGCTGAATGTGATTCTTTATCAGTAGAATTAACATCTGTCCATGAACATGTGCAGGACCGTATTAGGCGCCTTATTGAAGCAGTACCTTCCGTAGCCAGGCAGCATCAAAGTCGGCCACCGGTTGGCTCTCAGATCCAAACAAGCAACACGACTGGAGAAACTGCAGTGGTGACTGGGGCTCAAGTTGAAGGAATGGAGCACCAGAGAGTTGAGGAAAGAAAAGATGGAAGTGAGAAAATGCGCATGATGAAAGGAGTGAAACTAATAGCTAAAGCATTGAAGGATGTGGAAATGAGCAGCGGTAAGAGAGAGGGAGGAACTGGAAATTTTTTTGATTGCAACATATGCCTGTGCCTAGCAAAAGATCCTGTGTTGACCTGCTGTGGTCACATGTTTTGCTGGCCATGCTTTTATAACTTGCCATATCTCTATGGAAATGCAAGGGAGTGCCCAGTTTGTGATGGAGAGGTCACTGAAACTAACATTACTCCAATTTATGGTAATGCGAGTGACTGTGACAATTCTGATGTAGCTTGTTCGATAGCTCCTCCTCGACCTGCTGCACCAAGAATGATCCGTTTTAGGTATTAG 831 0.444 MARHSGVPFLGSEVSYKVKKTALLTFETALQCMKSGLNFQNPHFHLLELKQTREAVVGWRKLGKELDLNQFAANPTHTSNAECDSLSVELTSVHEHVQDRIRRLIEAVPSVARQHQSRPPVGSQIQTSNTTGETAVVTGAQVEGMEHQRVEERKDGSEKMRMMKGVKLIAKALKDVEMSSGKREGGTGNFFDCNICLCLAKDPVLTCCGHMFCWPCFYNLPYLYGNARECPVCDGEVTETNITPIYGNASDCDNSDVACSIAPPRPAAPRMIRFRY* 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00265 276 SUPERFAMILY RING/U-box 192 240 - -
Lapu9g00265 276 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 154 268 IPR045103 GO:0005783|GO:0006511|GO:0061630
Lapu9g00265 276 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 177 247 IPR013083 -
Lapu9g00265 276 MobiDBLite consensus disorder prediction 116 132 - -
Lapu9g00265 276 MobiDBLite consensus disorder prediction 139 158 - -
Lapu9g00265 276 SMART ring_2 193 233 IPR001841 -
Lapu9g00265 276 MobiDBLite consensus disorder prediction 112 132 - -
Lapu9g00265 276 Pfam zinc-RING finger domain 193 234 IPR001841 -
Lapu9g00265 276 ProSiteProfiles Zinc finger RING-type profile. 193 234 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00265 Lapu-Chr9 2595659 2599664 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g00265 120 275 C3H Transcription Factor Family AT3G58030 37.975 4.31e-28 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00265 - - pvu:PHAVU_009G211500g 269.626