Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00255 ATGTGTGTGCAGGATGCAGAGAAAGATATGGATAACACCTCAACAAATTCATGGCCTTTGCATTGTCACCTTTTGCTCGCCACCCAAATGGACAAAAAAGAATCTTTTTTCAGAACTTCAACTGATGACACCACAAATACAACTGTTCAAAGTTCCTTTCCTCTAGAAAGCATTTATGAGGACGCGGTGATTGCAGACAAGAAACAGAATCAGATGAATTTGGCCCCGGTTCTTCGGTCTGGAGAGTGGTCTGACATAGGAGAGCGGCCTTACATGGAGGACACTCATATATGCATTGGAGACTTGGCAAAGAAATTTAATTATAATGCACTTTCTGGGGAAGCTGTTTCCTTTTATGGTGTATTTGATGGACATGGAGGGAAGAGTGCTGCACAATTTGTGCGTGATAATTTGCCAAGATTTATTGTTGAGGATGTTAACTTTCCTTTGGAGCTTGAGAAGGTGGTCAAAAGGTCATTTTTGGAGACTGATGCTGCATTTCTAAAATCATCCTCTCAAGAGCCTTCCCTTTCTTCTGGTACAACTGCTTTAACTGCAATTATATTTGGAAGGTCTTTACTTGTAGCTAATGCGGGAGATTGCCGAGCTGTCTTGTCCCGCCATGGAAGGGCCATAGAAATGTCTAAAGATCATAGGCCAAACTGTGCCAACGAAAGGACACGAGTTGAGTCCCTAGGTGGCTTCATTGACAATGATTACCTGAATGGGCAGTTAGGTATCACTCGCGCCATCGGAGACTGGCACCTTGAAGGAATGAAGGGAATGAGTGAAAGAGGAGGACCACTGAGTGCTGAACCTGAACTTAAATTGATGACATTAACCAAAGAAGATGAATTCTTGATAATTGCCAGTGATGGAATATGGGATGTTTTTAGTAGCCAAAATGCTGTGGATTTTGCTAGGAGGAGGCTTCAAGAGCATAATGATGAGAAACTATGCTGCAAGGAAATAGTGCAGGAAGCAATCAAAAGAGAATCAACAGATAACTTGACAGTGGTGATGGTATGTTTTAACTCAGATCCTCCACCACCAGTGGTTGTGGAAAGAAGACGAGTAAGAAGAAACATATCTGCAGAAGGACTTCAGAATCTTAAATGCCTGCTAAAAGAATAA 1134 0.4206 MCVQDAEKDMDNTSTNSWPLHCHLLLATQMDKKESFFRTSTDDTTNTTVQSSFPLESIYEDAVIADKKQNQMNLAPVLRSGEWSDIGERPYMEDTHICIGDLAKKFNYNALSGEAVSFYGVFDGHGGKSAAQFVRDNLPRFIVEDVNFPLELEKVVKRSFLETDAAFLKSSSQEPSLSSGTTALTAIIFGRSLLVANAGDCRAVLSRHGRAIEMSKDHRPNCANERTRVESLGGFIDNDYLNGQLGITRAIGDWHLEGMKGMSERGGPLSAEPELKLMTLTKEDEFLIIASDGIWDVFSSQNAVDFARRRLQEHNDEKLCCKEIVQEAIKRESTDNLTVVMVCFNSDPPPPVVVERRRVRRNISAEGLQNLKCLLKE* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00255 377 FunFam Probable protein phosphatase 2C 22 64 347 - -
Lapu9g00255 377 Gene3D - 60 347 IPR036457 -
Lapu9g00255 377 SMART PP2C_SIG_2 94 344 IPR001932 -
Lapu9g00255 377 ProSiteProfiles PPM-type phosphatase domain profile. 79 344 IPR001932 -
Lapu9g00255 377 SUPERFAMILY PP2C-like 73 346 IPR036457 -
Lapu9g00255 377 CDD PP2Cc 79 344 IPR001932 -
Lapu9g00255 377 ProSitePatterns PPM-type phosphatase domain signature. 118 126 IPR000222 GO:0043169
Lapu9g00255 377 Pfam Protein phosphatase 2C 91 336 IPR001932 -
Lapu9g00255 377 SMART PP2C_4 69 342 IPR001932 -
Lapu9g00255 377 PANTHER PROTEIN PHOSPHATASE 2C 66 342 IPR015655 GO:0004722|GO:0006470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00255 Lapu-Chr9 2471764 2475336 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g00255 68 375 PP2C-type Phosphatase Gene Family AT2G25620 57.097 9.40e-129 373
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBP Lapu9g00255 PP2C 1.3e-68 CL0238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00255 K14803 - gmx:100813157 640.573
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g00255 9 2471764 2475336 Lapu9g00255 9 2471764 2475336 ECH
Lapu3g00763 3 8042053 8045567 Lapu9g00255 9 2471764 2475336 PCT