Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00252 ATGGCTGGAATGCTTCCAGGAGTTGAATGTGCAAGAAGGAGACGATTCCATAGATGTTTAGATTCAAACTCAACTTCTTCAGCTTCACATGTGTCCACAAGGCGATCTTCTTTTGGTTTGTATGCAAGTAACCATGAATGTCGTCTTTCCTTGTCCAACTCACAGCAAAGAGGTCTGTTATACCAGACACACCCAGATGAGGATATGGTAGGAGCAGCCAGAGAAGCCAGACAAAGATTGGATGACAAGTTTAGAGCACACAGGATGCCAGAAAACAAAAGGCAAAACAGTAGGGAGGGTGGAAGAACAAGCATAACAGAGTTGCACACAGAGGTATATGGGGCAAAGAAAGGTGGTGCAAGGAAATTCAGTTGGACTAGATGGAGCTGGAAGGCCTCTGAACAAGAGGACTGTGCTGTGTGCTTGGAATCATTCAGGGTTGGAGAGACACTGATCCATCTCCCTTGTGCACATAAGTTCCATGACAAATGCTTGAAACCATGGTTGGAAAATAATTCTCATTGTCCATGTTGCAGAACAGCTATTCTTTTCCCCTAG 558 0.4462 MAGMLPGVECARRRRFHRCLDSNSTSSASHVSTRRSSFGLYASNHECRLSLSNSQQRGLLYQTHPDEDMVGAAREARQRLDDKFRAHRMPENKRQNSREGGRTSITELHTEVYGAKKGGARKFSWTRWSWKASEQEDCAVCLESFRVGETLIHLPCAHKFHDKCLKPWLENNSHCPCCRTAILFP* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00252 185 PANTHER SI:CH211-59O9.10 11 183 - -
Lapu9g00252 185 SMART ring_2 138 178 IPR001841 -
Lapu9g00252 185 ProSiteProfiles Zinc finger RING-type profile. 138 179 IPR001841 -
Lapu9g00252 185 MobiDBLite consensus disorder prediction 82 100 - -
Lapu9g00252 185 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 119 183 IPR013083 -
Lapu9g00252 185 SUPERFAMILY RING/U-box 125 184 - -
Lapu9g00252 185 FunFam Zinc finger family protein 112 183 - -
Lapu9g00252 185 CDD RING-H2_PA-TM-RING 137 179 - -
Lapu9g00252 185 MobiDBLite consensus disorder prediction 82 101 - -
Lapu9g00252 185 Pfam Ring finger domain 137 179 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00252 Lapu-Chr9 2455505 2457438 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g00252 1 85 C3H Transcription Factor Family AT2G15580 50.526 1.16e-20 80.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00252 - - gmx:100527583 315.464
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g00252 9 2455505 2457438 Lapu9g00252 9 2455505 2457438 ECH