Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00249 ATGGCTTTTCACGATCATCTGGCGCACGAGATCACGTTTCAGCCGTTCACGGAGGAGCAGCAGATGGGTCAGGGGAGAGACATGCAGCGGCTGCTGCCGCTCTCCGGTGGAGCACCGACTTGGTTGAACGGCAGCAACGCGGCGACACTTCGGCAGCAGAATTTCCTCCACCTGCAGCCGGAGTCGGCCACGGCGCAGCAAAACGATGACGTTCGGGGAGGCATAGATCGGAACCGGACGGAGAGCAACTCAGAAGCTGATGATTTGGCGGAATACAAAGCGGACATTCTGGGACACCCACTTTACGATCAGCTCCTATCGGCTCACGTCTCGTGTCTGAGGATCGCCACACCCGTTGACCAGCTTCCAAGGATCGACGCACAGCTTCAGCAGTCGCAGCGCGTGGTTGACAAGTACTCTGGTCTTGGAAACGGCGTCGTCGATGACAAAGAGCTTGATCAATTCATGACGCATTATGTTATACTGCTCTGTGCTTTCAAAGAACAACTGCAACAACATGTTCGTGTTCATGCCATGGAAGCTGTTATGGCTTGTTGGGAGCTGGAGCAATCTCTACAAACCTTGACTGGTGTATCCCCCGGAGAAGGAACGGGTGCAACAATGTCAGACGATGAAGAAGACCAAGCTGAGAGTAATGCCAACTTATACGAAGGAAGCATGGATGGCGCTGATAGTCTCAGCTTTGGACCTCTTGTTCCCACCGAAACTGAAAGATCTTTGATGGAGCGTGTTAGGCAGGAGTTGAAGCATGAGCTAAAACAGGGTTACAAGGAGAAGATTGTGGACATAAGAGAAGAAATTCTACGAAAGAGAAGAGCGGGGAAGCTCCCAGGTGACACCACTTCTCTTTTAAAAGCTTGGTGGCAGTCACATTCCAAATGGCCATATCCAACTGAAGAAGACAAAGCAAGGTTGGTGCAGGAAACAGGCTTGCAACTAAAGCAGATAAATAACTGGTTCATAAATCAAAGGAAAAGGAATTGGCATACTAATCCTTCGTCTTCTAGTGGATCCAAAAGCAAACGCAAGAGTAGTGGTGCAGGTGAAACAAGTAACCAGAGCTTCATGTGA 1092 0.5018 MAFHDHLAHEITFQPFTEEQQMGQGRDMQRLLPLSGGAPTWLNGSNAATLRQQNFLHLQPESATAQQNDDVRGGIDRNRTESNSEADDLAEYKADILGHPLYDQLLSAHVSCLRIATPVDQLPRIDAQLQQSQRVVDKYSGLGNGVVDDKELDQFMTHYVILLCAFKEQLQQHVRVHAMEAVMACWELEQSLQTLTGVSPGEGTGATMSDDEEDQAESNANLYEGSMDGADSLSFGPLVPTETERSLMERVRQELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSLLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHTNPSSSSGSKSKRKSSGAGETSNQSFM* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00249 363 SMART KNOX1_2 90 134 IPR005540 GO:0003677|GO:0005634
Lapu9g00249 363 SMART HOX_1 276 341 IPR001356 GO:0003677
Lapu9g00249 363 MobiDBLite consensus disorder prediction 198 217 - -
Lapu9g00249 363 FunFam homeobox protein knotted-1-like 3 isoform X1 275 336 - -
Lapu9g00249 363 Pfam KNOX1 domain 92 133 IPR005540 GO:0003677|GO:0005634
Lapu9g00249 363 Gene3D - 280 357 - -
Lapu9g00249 363 ProSiteProfiles ELK domain profile. 254 274 IPR005539 GO:0003677
Lapu9g00249 363 Pfam KNOX2 domain 146 196 IPR005541 GO:0003677|GO:0005634
Lapu9g00249 363 Pfam ELK domain 254 275 IPR005539 GO:0003677
Lapu9g00249 363 MobiDBLite consensus disorder prediction 331 363 - -
Lapu9g00249 363 SMART ELK_2 254 275 IPR005539 GO:0003677
Lapu9g00249 363 SMART KNOX2_2 142 197 IPR005541 GO:0003677|GO:0005634
Lapu9g00249 363 MobiDBLite consensus disorder prediction 61 86 - -
Lapu9g00249 363 ProSiteProfiles 'Homeobox' domain profile. 274 337 IPR001356 GO:0003677
Lapu9g00249 363 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 124 348 - -
Lapu9g00249 363 CDD homeodomain 277 338 IPR001356 GO:0003677
Lapu9g00249 363 SUPERFAMILY Homeodomain-like 276 340 IPR009057 -
Lapu9g00249 363 Pfam Homeobox KN domain 294 333 IPR008422 GO:0003677|GO:0006355
Lapu9g00249 363 MobiDBLite consensus disorder prediction 72 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00249 Lapu-Chr9 2419459 2426100 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g00249 73 350 Homeobox Transcription Factor Family AT5G25220 79.094 7.26e-165 466
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Lapu9g00249 KNOX2 2.6e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00249 - - gmx:100816347 691.034
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g00249 9 2419459 2426100 Lapu9g00249 9 2419459 2426100 ECH
Lapu3g00754 3 7990405 7998115 Lapu9g00249 9 2419459 2426100 PCT