Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00244 ATGTTGGATGGTGAAGTGCCAACTGAAGGTGTGTTTCAAAATGCAAGCGGCTTTGTGGTGAATGGAAATAATAACCTTTGTGGAGGTATTTCCGAATTGCACCTACCACCATGCCCTTTGAAAGGTAAGAAACTTGCAAAACACCAGAAGTTTAGGTTGATACCGGTGATAGTTAGTGTGGTTGTTTTTCTTCTCATATTGTCAATTATTCTAACTATTTACTGGATGAGAAAAAAGAATAGCAAATCATCTTTGGATTCACCAACAATTGACCAGCTAGCTAAAGTTTCATACCAAAGCGTACATAATGGAACGGATGGGTTCTCAGCAACAAATTTGATTGGCTCTGGAAATTTTAGCTCTGTCTACAAAGGAACTCTTGAGTTCGAAGACAAAGTTGTTGCTATAAAGGTTCTAAATCTTCAAAAAGAAGGATCCCACAAGAGTTTCATAGCTGAATGCAACACACTTAAAGGTATTAAACATCGAAATCTGGTTCAGATTTTAACATGTTGTTCCCGCATAAATTACAAAGGTCAAGAATTCAAAGCTATAATTTTTGAGTACATGAAGAATGGAAGCCTAGAAGAATGGTTGCATCCAAGGACACTAGGTCCAGAACAACATCTGAGATCATTAAGCCTTGAGCAAAGATTAAATATCATAATTGATGTTGCTTCTGCAATACATTATCTTCATCATGAATGTGAGCAATCGATTATACATCGTGATTTAAAGCCAAGCAATATTCTTCTTGATGATGACATGGTTGCTCATGTGTCTGATTTTGGCATAGCAAAATTTCTCTCAACTATTAATGGTACTACTAAGCAAACTAGTACAATTGAGTTCAAGGGGACTATTGGCTATGCTCCGCCAGAGTATGGAATGGGTGATGTGTCTATGAAGGGTGACATGTACAGTTTTGGGATCCTTTTGTTGGAAATGTTTACCAGAAGACGACCCACAGATGAAATCTTTGAAAATGGTCAAAATTTGCATAAATTTGTGGAAGATTCATTGTTTGATAATCTCTTACAAATTTTGGACCCATCGCTTGTCCTAGAGCATGAAGGATCAACAATAGAAGAAGTGAGCAATCAAAATCTCACTGCAGTTGATGAAAACTACTTAGTTTCACTCTTTAAGATTGGACTTGCTTGCTCAATGGAATCACCCAAAGAAAGAATGGATATTAAGGAGGTCACTAAAGAACTAAGCAAAATCAGAAAAGCAAGTTATAATAGT 1248 0.3662 MLDGEVPTEGVFQNASGFVVNGNNNLCGGISELHLPPCPLKGKKLAKHQKFRLIPVIVSVVVFLLILSIILTIYWMRKKNSKSSLDSPTIDQLAKVSYQSVHNGTDGFSATNLIGSGNFSSVYKGTLEFEDKVVAIKVLNLQKEGSHKSFIAECNTLKGIKHRNLVQILTCCSRINYKGQEFKAIIFEYMKNGSLEEWLHPRTLGPEQHLRSLSLEQRLNIIIDVASAIHYLHHECEQSIIHRDLKPSNILLDDDMVAHVSDFGIAKFLSTINGTTKQTSTIEFKGTIGYAPPEYGMGDVSMKGDMYSFGILLLEMFTRRRPTDEIFENGQNLHKFVEDSLFDNLLQILDPSLVLEHEGSTIEEVSNQNLTAVDENYLVSLFKIGLACSMESPKERMDIKEVTKELSKIRKASYNS 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00244 416 Gene3D Phosphorylase Kinase; domain 1 89 189 - -
Lapu9g00244 416 Pfam Protein kinase domain 111 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu9g00244 416 ProSitePatterns Serine/Threonine protein kinases active-site signature. 240 252 IPR008271 GO:0004672|GO:0006468
Lapu9g00244 416 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 190 416 - -
Lapu9g00244 416 SUPERFAMILY Protein kinase-like (PK-like) 82 406 IPR011009 -
Lapu9g00244 416 PANTHER OS04G0122200 PROTEIN 2 412 - -
Lapu9g00244 416 SMART serkin_6 108 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu9g00244 416 FunFam LRR receptor-like serine/threonine-protein kinase EFR 78 189 - -
Lapu9g00244 416 CDD STKc_IRAK 114 409 - -
Lapu9g00244 416 Gene3D Transferase(Phosphotransferase) domain 1 190 416 - -
Lapu9g00244 416 ProSiteProfiles Protein kinase domain profile. 108 409 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu9g00244 416 ProSitePatterns Protein kinases ATP-binding region signature. 114 137 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00244 Lapu-Chr9 2395437 2398866 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g00244 2 416 Receptor kinase-like Gene Family AT3G47570 45.327 8.00e-118 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Lapu9g00244 Pkinase 2e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00244 - - gmx:100782685 634.795