Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00228 ATGCAGCCCTGTAGCAGAGAAATGCAAGGAATCAACTCCCTCTTAAACTCTTCCCAAATCTCACTCCAGGACCTCCACACCACCACCACCACCACCACCACCACCACCAACCAGATCCAAAATTCACAAATGAACCACCACCAACCACCACTCCACCACCAACACCAACTCCCTCACTTCGACCCAACCTCTCATGACGACTTTCTCGAGCAAATGCTCTCCTCCTGCTCCTGGCCCGACCTCAACCCGAACAAGCCCTTGTGGGACCCCAATAACCTCTCCGACCAAACCACGCCCTCCAACAACGACACTAACAATAATAACAACAACAATAATAATGTCGCTTTCCCCTACGACGAACCCTCCGCCTTGGCCTCCAAGTTCCGCAACCACCAGATCAGCGCCTCCACAACCAAAAACGCCGCAGCAGCTCTCATGCTCCAACACCAACTCCTCATGTCCCGAGACTCTCCGCTCCTTCACATCCCGCTTTCCTTACCTCCAAACGACGTCGTTGACGCCTCCTCCTTCAAATCCCCCAATCCCGGTGGTGAGACTTCAGTCCAAGCTCTCTACAACGGCTTCGCCGGATCTCTGCATGGCGCCGGTCAAGCCTCGAACCAGCCTCAGCATTTTCAACATCCTCAGGGAAGTTCGAATCCGATGCAGGGGCAAAATTTTGGTGCACCGGGTGCTGGGGCCGCAACGAACCAAGCTCCGGCGAGTAGCACGCCGGCTCAGCCGAGGCAGAGGGTTCGTGCAAGGAGAGGTCAAGCCACGGACCCACACAGCATCGCTGAAAGGTTAAGAAGGGAGAGAATCGCAGAGAGAATGAAGGCCCTACAGGAACTGGTTCCCAATGCCAACAAGACAGACAAGGCATCCATGCTAGATGAGATCATCGATTACGTGAAGTTCCTGCAGCTCCAAGTCAAGGTTCTGAGCATGAGCAGATTGGGCGGTGCAGCTGCTGTCGCACCTCTTGTTGCTGATATGTCTTCTGAGGGAGGCGGTGACTGCATCCAAGCCAACGGCAACAGTAACGGCGGCGGCGCCCTCGGGCCGAACTCGAACAGCAACACCAACAACCACCAAACGACTGCTTCAACCTCAAATGACAGCCTGACCATGACGGAGCATCAGGTAGCGAAGCTGATGGAGGAGGACATGGGTTCCGCCATGCAGTATCTTCAAGGCAAGGGCCTTTGCCTTATGCCCATTTCCCTTGCCACTGCCATCTCCACTGCCACGTGTCACACCAGGAGCCCCTTGATCAATGCCGCCGCGCGCAGCACCCAGATTCCGACCAACGGCGCCCCCGGCACACACGCCACCACCGCCGTGGCGTCCAACGGGGAAGGCCCGTCGTCTCCGAGCATGTCCGTGCTGACGGTGCAGTCGGCCGTGGTGGGCAACGAGGGCGCCGTGAAGGACGCTGCCTCCGTTTCGAAGCCGTGA 1458 0.5727 MQPCSREMQGINSLLNSSQISLQDLHTTTTTTTTTTNQIQNSQMNHHQPPLHHQHQLPHFDPTSHDDFLEQMLSSCSWPDLNPNKPLWDPNNLSDQTTPSNNDTNNNNNNNNNVAFPYDEPSALASKFRNHQISASTTKNAAAALMLQHQLLMSRDSPLLHIPLSLPPNDVVDASSFKSPNPGGETSVQALYNGFAGSLHGAGQASNQPQHFQHPQGSSNPMQGQNFGAPGAGAATNQAPASSTPAQPRQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADMSSEGGGDCIQANGNSNGGGALGPNSNSNTNNHQTTASTSNDSLTMTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHTRSPLINAAARSTQIPTNGAPGTHATTAVASNGEGPSSPSMSVLTVQSAVVGNEGAVKDAASVSKP* 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00228 485 Pfam Helix-loop-helix DNA-binding domain 263 308 IPR011598 GO:0046983
Lapu9g00228 485 MobiDBLite consensus disorder prediction 42 66 - -
Lapu9g00228 485 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 258 307 IPR011598 GO:0046983
Lapu9g00228 485 MobiDBLite consensus disorder prediction 199 265 - -
Lapu9g00228 485 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 256 318 IPR036638 GO:0046983
Lapu9g00228 485 MobiDBLite consensus disorder prediction 87 117 - -
Lapu9g00228 485 MobiDBLite consensus disorder prediction 342 374 - -
Lapu9g00228 485 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 77 413 - -
Lapu9g00228 485 MobiDBLite consensus disorder prediction 87 118 - -
Lapu9g00228 485 MobiDBLite consensus disorder prediction 200 249 - -
Lapu9g00228 485 SMART finulus 264 313 IPR011598 GO:0046983
Lapu9g00228 485 Gene3D - 253 315 IPR036638 GO:0046983
Lapu9g00228 485 MobiDBLite consensus disorder prediction 433 461 - -
Lapu9g00228 485 FunFam Transcription factor bHLH66 255 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00228 Lapu-Chr9 2232756 2236947 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g00228 232 484 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G24260 60.370 7.27e-90 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lapu9g00228 HLH 1.9e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00228 - - gmx:100807286 604.364
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g00228 9 2232756 2236947 Lapu9g00228 9 2232756 2236947 ECH