Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00227 ATGGGTGACAAAAGCAACGGCGGCGAGGCGATTAACTCCATGCTGCTCCACGGGAAGTACGAGCTGGGGCGGCTACTGGGGCACGGAACTTTCGCCAAGGTCTACCACGCGCGGAACCTCAATAGCGGAAAGAGCGTGGCCATGAAGGTGGTCGGGAAGGAGAAGGTGATGAAGGTGGGGATGATGGAGCAGATCAAAAGGGAGATCTCGGCCATGAACATGGTGAAGCACCCCAACATCGTGCAGCTCCACGAGGTCATGGCCAGCAAGTCCAAGATCTACATCGCCATGGAGCTCGTGCGCGGCGGCGAGCTCTTTAACAAGATCGCCCGCGGCCGCCTCAGGGAGGAGACGGCGCGCCTCTACTTCCAGCAGCTTGTCTCCGCCGTCGACTTCTGCCACAGCCGTGGCGTCTACCACCGCGACCTCAAGCCGGAGAATCTCCTCCTCGACGAGGACGGCAATCTGAAAGTCACCGACTTCGGCCTCAGCACCTTCTCCGAGCACCTCCGCCAGGACGGCCTGCTTCACACCACGTGCGGCACCCCGGCCTACGTGGCCCCGGAGGTCATCGGGAAGAAAGGCTACGACGGCGCCAAGGCTGATATCTGGTCTTGCGGTGTAATCCTCTATGTACTCCTGGCAGGGTTTTTACCCTTCCAAGATGACAACTTGGTCGCCTTGTATAAGAAAATTTACCGCGGTGACTTCAAGTGTCCCCCGTGGTTTTCATCCGAGGCTCGCCGACTCATCACGAAGCTCCTCGACCCGAACCCGAATAACCGAATAACGATTTCCAAGATCATGGAGTCGTCGTGGTTTAAAAAACCGGTTCCTAAGAACAAGATGGGAGTGAAGAGGGAGGAGATGGATTTGGAGGAGAAGATTAAGCAGCAGGAAGAATGCAAGTCCACCACGATGAATGCTTTTCATATAATTTCGCTTTCGGAGGGGTTCGATTTGTCGCCCTTGTTCGAGGAGAAGAAGAGGGAGGAGAAGGAGATTCGGTTTGCGACCACACGCCCCGCGAGCAGCGTGATTTCGCGGCTGGAGGAGGTGGCGAAGGCGGTGAAGTTTGACGTGAAGAAAAGTGAGACGAAAGTGAGGTTGCAGGGTCAAGAGCGGGGTCGGAAAGGGAAGCTTGCAATTGCTGCAGATTTATACGCCGTGACCAACTTCGTCCTGCGCTTAAAGACATCGTGTGGAGGACTTCCCCTCCTGAGAATCCCACACCCGCTTGAACCAACACTCCCACTGTTACCTCTTCTTGTTTACAGACATTTAATTCCGTTCCCTTCCACTGTGTTCCTTTGTTTGTCAATTATTGTTTCATGTCAGGATTGA 1344 0.5506 MGDKSNGGEAINSMLLHGKYELGRLLGHGTFAKVYHARNLNSGKSVAMKVVGKEKVMKVGMMEQIKREISAMNMVKHPNIVQLHEVMASKSKIYIAMELVRGGELFNKIARGRLREETARLYFQQLVSAVDFCHSRGVYHRDLKPENLLLDEDGNLKVTDFGLSTFSEHLRQDGLLHTTCGTPAYVAPEVIGKKGYDGAKADIWSCGVILYVLLAGFLPFQDDNLVALYKKIYRGDFKCPPWFSSEARRLITKLLDPNPNNRITISKIMESSWFKKPVPKNKMGVKREEMDLEEKIKQQEECKSTTMNAFHIISLSEGFDLSPLFEEKKREEKEIRFATTRPASSVISRLEEVAKAVKFDVKKSETKVRLQGQERGRKGKLAIAADLYAVTNFVLRLKTSCGGLPLLRIPHPLEPTLPLLPLLVYRHLIPFPSTVFLCLSIIVSCQD* 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00227 447 Pfam Protein kinase domain 20 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu9g00227 447 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 13 387 - -
Lapu9g00227 447 Gene3D Kinase associated domain 1, KA1 301 403 - -
Lapu9g00227 447 SUPERFAMILY Protein kinase-like (PK-like) 17 275 IPR011009 -
Lapu9g00227 447 Pfam NAF domain 305 363 IPR004041 GO:0007165
Lapu9g00227 447 FunFam Non-specific serine/threonine protein kinase 302 406 - -
Lapu9g00227 447 Gene3D Transferase(Phosphotransferase) domain 1 102 279 - -
Lapu9g00227 447 ProSitePatterns Protein kinases ATP-binding region signature. 26 53 IPR017441 GO:0005524
Lapu9g00227 447 ProSitePatterns Serine/Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672|GO:0006468
Lapu9g00227 447 ProSiteProfiles Protein kinase domain profile. 20 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu9g00227 447 CDD STKc_SnRK3 19 273 - -
Lapu9g00227 447 FunFam Non-specific serine/threonine protein kinase 10 305 - -
Lapu9g00227 447 FunFam Non-specific serine/threonine protein kinase 12 99 - -
Lapu9g00227 447 SMART serkin_6 20 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu9g00227 447 Gene3D Phosphorylase Kinase; domain 1 17 101 - -
Lapu9g00227 447 CDD CIPK_C 308 391 - -
Lapu9g00227 447 ProSiteProfiles NAF domain profile. 302 326 IPR018451 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00227 Lapu-Chr9 2222995 2225753 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g00227 5 395 CBL-interacting serine-threonine protein kinases AT4G30960 72.932 0.0 570
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Lapu9g00227 Pkinase 1.4e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00227 - K07198 gmx:547644 714.146