Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00223 ATGGGGAAGCACCAAAGACAGAAAACCTATGCAAGCACCAACAATAACCTTAACTCAACCGACACTGTCACCACCAAGGTGAAACGAACAAGAAGAAGTGTCCCTAGAGATTCTCCTCCTCAACGCAGCTCAATATACAGAGGAGTCACTAGGCACCGATGGACAGGCCGATATGAAGCTCATTTGTGGGACAAAAGTTGCTGGAATGAGTCACAGAATAAGAAAGGACGACAAGGTGCTTATGACGAAGAAGAGGCCGCAGCACACGCTTACGATCTAGCAGCATTGAAATATTGGGGTCAAGATACCATCCTTAATTTTCCATTATCAACCTACCAGAATGAAGTGAAAGAAATGGAGGGTCAATCTCGTGAAGAGTATATTGGATCATTAAGAAGGAAAAGCAGTGGTTTTTCTCGTGGAGTGTCTAAATACAGAGGTGTTGCAAGACATCATCATAATGGAAGATGGGAGGCTCGGATTGGTAGGGTTTTCGGAAACAAATATCTTTACCTCGGAACTTACGCAACACAAGAAGAAGCTGCCACAGCATATGACATGGCAGCTATTGAATATCGAGGACTCAACGCTGTCACCAATTTCGACCTTAGTCGCTACATCAAATGGCTTAAGCCCAACAACAACAATAACACTGTGAAGTCTAATATTATTGATTCTAACCCTAATTGTGAGACCAACTTTACCACAAACTCTAACGAACAACAAGGATTCAACTTTTTCCAGAATCAAGAATCAACAATGAGTCAGCCTCGACCATCTGGCGCCACGTCAGCCCTAGGGCTTTTGCTTCAGTCGTCCAAGTTTAAGGAGATGATGGAGATGACTTCCGCCACGGATTTGTCAACATCGGAGTCTGAGTTGCCGCCGTGCACATTTCCCGATGACATTCAGACCTATTTCGAGTGTGAAGATTCCAATAGATATGGAGAAGGGGATGATGTGATGTTCAGTGAGCTCAACAGCTTTGTGCCTCATATGTTCCATGGTGATGATTTCGAGTCTTGA 1026 0.4405 MGKHQRQKTYASTNNNLNSTDTVTTKVKRTRRSVPRDSPPQRSSIYRGVTRHRWTGRYEAHLWDKSCWNESQNKKGRQGAYDEEEAAAHAYDLAALKYWGQDTILNFPLSTYQNEVKEMEGQSREEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDMAAIEYRGLNAVTNFDLSRYIKWLKPNNNNNTVKSNIIDSNPNCETNFTTNSNEQQGFNFFQNQESTMSQPRPSGATSALGLLLQSSKFKEMMEMTSATDLSTSESELPPCTFPDDIQTYFECEDSNRYGEGDDVMFSELNSFVPHMFHGDDFES* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00223 341 CDD AP2 143 204 IPR001471 GO:0003700|GO:0006355
Lapu9g00223 341 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 18 262 - -
Lapu9g00223 341 ProSiteProfiles AP2/ERF domain profile. 45 108 IPR001471 GO:0003700|GO:0006355
Lapu9g00223 341 MobiDBLite consensus disorder prediction 1 44 - -
Lapu9g00223 341 PRINTS Ethylene responsive element binding protein signature 184 204 IPR001471 GO:0003700|GO:0006355
Lapu9g00223 341 PRINTS Ethylene responsive element binding protein signature 46 57 IPR001471 GO:0003700|GO:0006355
Lapu9g00223 341 SUPERFAMILY DNA-binding domain 143 204 IPR016177 GO:0003677
Lapu9g00223 341 MobiDBLite consensus disorder prediction 1 24 - -
Lapu9g00223 341 Gene3D AP2/ERF domain 45 110 IPR036955 GO:0003700|GO:0006355
Lapu9g00223 341 Gene3D AP2/ERF domain 143 204 IPR036955 GO:0003700|GO:0006355
Lapu9g00223 341 ProSiteProfiles AP2/ERF domain profile. 144 202 IPR001471 GO:0003700|GO:0006355
Lapu9g00223 341 SMART rav1_2 144 208 IPR001471 GO:0003700|GO:0006355
Lapu9g00223 341 SMART rav1_2 45 114 IPR001471 GO:0003700|GO:0006355
Lapu9g00223 341 SUPERFAMILY DNA-binding domain 44 110 IPR016177 GO:0003677
Lapu9g00223 341 FunFam AP2-like ethylene-responsive transcription factor 44 110 - -
Lapu9g00223 341 FunFam AP2-like ethylene-responsive transcription factor 143 204 - -
Lapu9g00223 341 Pfam AP2 domain 45 100 IPR001471 GO:0003700|GO:0006355
Lapu9g00223 341 Pfam AP2 domain 143 194 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00223 Lapu-Chr9 2172110 2176004 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g00223 41 238 AP2-EREBP Transcription Factor Family AT5G57390 60.563 2.55e-86 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Lapu9g00223 AP2 1.2e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00223 K09285 - gmx:100795869 583.563