Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00211 ATGGAAGCCAGCGCTGGACTGGTCGCTGGTTCACATAACCGCAATGAGCTAGTTGTCATTCATGGCCATGAAGAGCACAAGCCTCTGAAGAACTTGGATGGTCAAGTATGTGAGATTTGTGGTGATGGCGTGGGACTCACGGTGGATGGAGACTTATTTGTGGCTTGCAATGAGTGTGGTTTTCCAGTGTGCAGACCTTGCTATGAGTATGAAAGGAGAGAAGGGAGCCACCTTTGCCCACAGTGCAAAACCAGATACAAGCGTCTCAAAGGGAGCCCGCGGGTGGAGGGAGATGAGGAGGAGGAGGATGTGGATGACATTGAGCATGAGTTCAATATTGATGATGAAAAGAACAAGCATGGCAATGCTGCAGAGGCCATGCTTCATGGGAAAATGAGCTATGGTAGAGGTCCTGAAGATGATGAGAATTCCCAGTTCCCAACACCTGTCATCTCTGGCGGTCGTTCTAGGCCTGTAAGTGGGGAGTTCCCAATATCATCTAACGGTTATGGGGAGCAGATGTTGTCTTCTTCACTGCATAAACGAGTGCATCCATATCCAGTGTCTGAACCTGGGAGTGCCAGATGGGATGAAAAGAAAGAGGATGGATGGAAAGAAAGGATGGATGACTGGAAATTGCAGCAAGGCAATTTGGGGCCCGAACCTGATGAAGATTCAGATGCAGCCATGTTAGATGAAGCAAGGCAACCACTTTCAAGGAAAGTACCAATAGCATCTAGCAAAATCAATCCATATAGAATGGTGATTGTGGCACGCCTTGTCATTCTTGCTTTCTTCCTCAGATACAGACTTATGAATCCTGTACATGATGCACTGGGGCTGTGGCTAACCTCTATCATATGTGAAATATGGTTTGCTTTCTCATGGATTCTGGATCAGTTTCCCAAATGGTTTCCCATTGATCGAGAGACCTACCTTGATCGTCTTTCCATCAGGTATGAGCGTGAAGGTGAACCAAACATGCTTGCTCCTGTAGATGTCTTTGTTAGTACCGTGGATCCAATGAAGGAACCTCCTCTGGTTACCGGAAACACTATTCTTTCAATCTTGGCCATGGATTACCCAGTTGATAAGATATCATGCTATATTTCGGATGATGGAGCCTCAATGTGTTCATTTGAGTCCCTGTCAGAAACTGCAGAGTTTGCTAGGAAGTGGGTACCGTTTTGTAAGAAATTTTCTATAGAACCTCGGGCCCCTGAGATGTACTTCAGTGAGAAGATAGACTACTTAAAGGACAAAGTGCAACCCACCTTTGTTAAGGAGCGTCGAGCCATGAAGAGGGAATACGAAGAGTTTAAGGTTAGGATCAATGCACTCGTTGCAAAGGCCCAGAAAGTTCCTCAGGGAGGATGGATTATGCAGGATGGAACACCGTGGCCAGGAAACAACACTAAGGATCATCCTGGCATGATTCAAGTGTTTCTTGGAAGCAATGGGGGTCTAGATACTGAAGGAAACCAGCTTCCTCGTCTTGTTTATGTTTCCAGAGAGAAAAGGCCTGGTTTTCAACACCACAAGAAAGCTGGTGCCATGAATGCTCTGGTTAGAGTATCTGCTGTTCTTACAAATGCTCCTTTCATGCTGAACTTGGATTGTGATCACTATGTCAATAACAGCAAGGCAGCCCGAGAGGCCATGTGCTTCTTGATGGACCCCCAGATAGGGAAGAAGGTTTGCTATGTCCAGTTTCCTCAAAGATTTGACGGTATTGATACACATGATCGTTATGCCAACAGGAACACAGTTTTCTTTGATATTAACATGAAGGGTCTAGATGGTATTCAAGGACCTGTATATGTGGGGACTGGATGTGTTTTCAGGAGGCAAGCTTTGTACGGCTATAATCCTCCGAAGGGCCCCAAGCGTCCAAAAATGGTAAGCTGTGATTGCTGCCCGTGTTTTGGAAGCCGCAAGAAGTACAAGGAGAAGAGTGATGCAAATGGAGAGGCTGCAAGCCTAAAAGGGATGGATGATGACAAAGAGATGCTGATGTCCCAAATGAATTTTGAGAAGAAATTTGGACAGTCCTCTATCTTTGTGACTTCTACTTTGATGGAAGAGGGTGGCGTGCCTCCTTCTTCTAGTCCAGCTGCCCTGCTTAAAGAAGCCATTCATGTGATCAGCTGTGGATATGAAGATAAAACTGAATGGGGACTTGAGCTTGGTTGGATCTATGGATCTATTACAGAAGATATTCTAACAGGCTTTAAGATGCATTGCCGCGGGTGGAGGTCTATTTACTGTATGCCAAAGAGAGCTGCATTCAAGGGTACTGCTCCCATAAACTTGTCAGATCGTCTCAATCAGGTGCTTCGTTGGGCACTTGGTTCCATTGAGATTTTCTTCAGTCACCATTGCCCTCTATGGTATGGCTTCAAGGAAAAGAAGCTAAAGTGGCTTGAGAGATTTGCCTATGCAAACACAACAGTGTATCCTTTCACCTCCATTCCTCTTGTTGCCTATTGTATTCTTCCTGCAGTTTGTTTACTCACTGACAAATTCATTATGCCACCGATAAGCACCTTTGCTGGTTTGTACTTTGTTGCTCTCTTCTCTTCAATCATTGCAACTGGTATTCTTGAGTTGAAATGGAGTGGAGTGAGCATTGAGGAATGGTGGAGAAATGAGCAGTTTTGGGTCATTGGTGGCGTATCAGCTCACCTTTTTGCTGTGATACAAGGTCTGCTAAAGGTTCTGGCTGGAATTGACACCAACTTCACTGTTACGTCCAAGGCAGCAGATGATGAGGAGTTTGGAGAATTATACACCTTTAAGTGGACTACTCTCCTAATTCCTCCAACCACTATCTTGATCATTAACATTGTTGGTGTTGTTGCTGGAATCTCAGATGCCATAAACAATGGGTACCAATCTTGGGGACCACTGTTTGGAAAGCTCTTCTTTTCTTTCTGGGTGATTGTCCATCTGTATCCATTCCTTAAAGGTTTGATGGGTCGGCAAAACCGCACACCCACCATTGTGGTGATTTGGTCAGTTCTATTGGCCTCTATTTTCTCCTTGCTGTGGGGTAATTCATGGTTTAACAAACCAACAAAGTGGCAATACACAAGGATGAATAAGGAGCGATTGAAAATTTTGTGTAGCATAAACGAGTGTTATCAATTTTGTAAATCTTCTCAAAAGCATATTGATTACCATATGGTGAAACTGCCCGAGGATTGTAAAGTAAATCAAAATTGCAGACTAATGTGTTCACTGTTTGCAAGATTGGTATGTTAA 3264 0.4442 MEASAGLVAGSHNRNELVVIHGHEEHKPLKNLDGQVCEICGDGVGLTVDGDLFVACNECGFPVCRPCYEYERREGSHLCPQCKTRYKRLKGSPRVEGDEEEEDVDDIEHEFNIDDEKNKHGNAAEAMLHGKMSYGRGPEDDENSQFPTPVISGGRSRPVSGEFPISSNGYGEQMLSSSLHKRVHPYPVSEPGSARWDEKKEDGWKERMDDWKLQQGNLGPEPDEDSDAAMLDEARQPLSRKVPIASSKINPYRMVIVARLVILAFFLRYRLMNPVHDALGLWLTSIICEIWFAFSWILDQFPKWFPIDRETYLDRLSIRYEREGEPNMLAPVDVFVSTVDPMKEPPLVTGNTILSILAMDYPVDKISCYISDDGASMCSFESLSETAEFARKWVPFCKKFSIEPRAPEMYFSEKIDYLKDKVQPTFVKERRAMKREYEEFKVRINALVAKAQKVPQGGWIMQDGTPWPGNNTKDHPGMIQVFLGSNGGLDTEGNQLPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNAPFMLNLDCDHYVNNSKAAREAMCFLMDPQIGKKVCYVQFPQRFDGIDTHDRYANRNTVFFDINMKGLDGIQGPVYVGTGCVFRRQALYGYNPPKGPKRPKMVSCDCCPCFGSRKKYKEKSDANGEAASLKGMDDDKEMLMSQMNFEKKFGQSSIFVTSTLMEEGGVPPSSSPAALLKEAIHVISCGYEDKTEWGLELGWIYGSITEDILTGFKMHCRGWRSIYCMPKRAAFKGTAPINLSDRLNQVLRWALGSIEIFFSHHCPLWYGFKEKKLKWLERFAYANTTVYPFTSIPLVAYCILPAVCLLTDKFIMPPISTFAGLYFVALFSSIIATGILELKWSGVSIEEWWRNEQFWVIGGVSAHLFAVIQGLLKVLAGIDTNFTVTSKAADDEEFGELYTFKWTTLLIPPTTILIINIVGVVAGISDAINNGYQSWGPLFGKLFFSFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWGNSWFNKPTKWQYTRMNKERLKILCSINECYQFCKSSQKHIDYHMVKLPEDCKVNQNCRLMCSLFARLVC* 1088
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00211 1087 SUPERFAMILY Nucleotide-diphospho-sugar transferases 346 852 IPR029044 -
Lapu9g00211 1087 FunFam Cellulose synthase 19 110 - -
Lapu9g00211 1087 Pfam Zinc-binding RING-finger 27 104 IPR027934 -
Lapu9g00211 1087 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 478 623 IPR029044 -
Lapu9g00211 1087 CDD mRING-HC-C4C4_CesA 35 85 - -
Lapu9g00211 1087 MobiDBLite consensus disorder prediction 132 160 - -
Lapu9g00211 1087 Pfam Cellulose synthase 332 1017 IPR005150 GO:0016020|GO:0016760|GO:0030244
Lapu9g00211 1087 FunFam Cellulose synthase 449 623 - -
Lapu9g00211 1087 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 110 IPR013083 -
Lapu9g00211 1087 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 235 1006 - -
Lapu9g00211 1087 SUPERFAMILY RING/U-box 21 107 - -
Lapu9g00211 1087 Coils Coil 430 450 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00211 Lapu-Chr9 2029228 2043948 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g00211 1 1017 Cell Wall Biosynthesis AT5G17420 85.672 0.0 1802
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00211 K10999 - gmx:100815436 2053.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g00211 9 2029228 2043948 Lapu9g00211 9 2029228 2043948 ECH
Lapu3g00897 3 9671658 9676325 Lapu9g00211 9 2029228 2043948 PCT