Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00179 ATGGAGCCTATGGACATAGTTGGAAAAGCCAAGGAAGACGCTTCGCTTCCTAAAGCAACAATGACGAAAATCATTAAGGAGATGTTGCCCCCGGACGTGCGTGTCGCCAGAGATGCGCAGGATTTGTTGATCGAATGTTGTGTCGAGTTTATAAACCTTGTCTCATCTGAGTCCAATGAAGTCTGTAACAAAGAGGAAAGAAGGACGATTGCACCGGAGCACGTGTTGAAGGCTTTAGGGGTTCTTGGATTTGGCGACTACATCGAGGAAGTTTATGCAGCATATGAACAACACAAGCTGGAGACAATGCAAGACTCTTTGAAAGGTGCCAAGTGGAGCAACAGGGCTGAGATGACTGAGGAAGAAGCATTGGCTGAGCAGCAAAGGATGTTTGCAGAGGCACGTGCCAGAATGAATGGAGGAGCCATTACTTCCAAGCAGCCAGACGCTGACCAAAGTTTATAG 465 0.4753 MEPMDIVGKAKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCNKEERRTIAPEHVLKALGVLGFGDYIEEVYAAYEQHKLETMQDSLKGAKWSNRAEMTEEEALAEQQRMFAEARARMNGGAITSKQPDADQSL* 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00179 154 Coils Coil 115 135 - -
Lapu9g00179 154 PANTHER PROTEIN DR1 HOMOLOG 1 153 IPR044255 -
Lapu9g00179 154 FunFam Negative cofactor 2 beta 6 143 - -
Lapu9g00179 154 SUPERFAMILY Histone-fold 12 143 IPR009072 GO:0046982
Lapu9g00179 154 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 14 79 IPR003958 -
Lapu9g00179 154 Gene3D Histone, subunit A 5 143 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00179 Lapu-Chr9 1662677 1666850 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g00179 1 152 CCAAT-DR1 Transcription Factor Family AT5G23090 81.818 8.61e-92 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Lapu9g00179 CBFD_NFYB_HMF 7.6e-23 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00179 K21751 - gmx:547635 298.901