Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00176 ATGGCCAAAGCAGAAGACAATGATACCACCTCGCCCGAGCGCCAGGACCAAACCAAAATTAACAAGAAGAAGCTTCGCAAGAGAAAAAGACCAAACAAGAACGACCATAAACAAGAGGAGAAGAACGATGCCAAGATTGATAGCGCGCTAACACAAACCGAAGATGAAGAAGAAGACGAAGAAAAAGAAGAGACAAAGGTAAACGCTGATGATTCATCCGGAATTATGAGTTCCGAGTCTTTTTCCTCTCTTAGCTTGTCCGAAGCTACTTCCAAAGCCATTGCAGACATGGGCTTCCAGCGTATGACTCAGATTCAAGCGAGGGCGATTCCGCCGCTGCTGGACGGAAAGGACGTGCTGGGTGCGGCGAGAACGGGTGCTGGGAAAACCCTAGCGTTTTTGGTTCCGGCCGTGGAGTTGCTGTGCAACGCTCAGTTCACGCCGCTCAACGGGACGGGTGTTGTTGTGATATGTCCAACGAGGGAGCTCGCGATTCAGACGCACGCCGTGGCGAAGGAACTGCTGAAGTACCATTCACAAACGCTCGGGTTGGTGATTGGGGGTTCGGGGCGTAAGGGAGAGGCCGAGCGCATTGTGAAAGGGGTGAACCTATTGGTGGCGACGCCGGGTAGGCTTCTCGATCATCTTCAAAACACGACGGGGTTTATACATAAAAACTTGAAGTGCCTCATGATTGATGAAGCTGACAGGATATTGGAAGCAAACTTTGAGGAGGAGATGAAGCAGATTATTAACATACTTCCAAAGAAAAGGCAGACAGCTTTGTTTTCAGCCACACAAACAAAGAAGGTTGAGGATCTTGCTCGATTATCTTTTCAGACAACTCCTATTTACATTGATGTAGATGATGGGAGAAAAAGGGTCACAAATGAAGGATTGCAACAGGGTTATGTTGTTGTTCCCTGTGCTAAGCGTTTTGTTGTTCTCTACTCATTCTTGAGGAGATATCAATCAAAAAAAGTGATGGTTTTTTTCTCTTCATGCAACTCTGTCAAGTTCCATGCGGATCTTCTTAAGTGCACTGGGTTGGACTGCTTAAATATTCATGGAAAACAAAAACAACATGCCCGTACTACTACGTTCTTCAACTTCTGCAAAGCTGAAAAGGGAATCTTGCTCTGTACTGATGTTGCTGCTCGTGGACTTGATATACCTGATGTGGACTGGATTGTGCAGTATGATCCACCTGATGAACCAAAGGAATATATCCATAGGGTTGGTAGAACAGCTCGTGGGGAAGGTGGAAAAGGAAATGCTTTACTTTTTCTGATTCCTGAAGAATTGCAATTTCTTCACTATTTGAAGGCAGCAAAGGTTCCTGTGAAAGAGTATGCATTTGATCATAAGAAGCTGGCAAATGTACAATCTCAACTGGAGAAGTTGGTGGCTGGCATTTATCATTTGAACAATATGGCTAAAGACGCATATCGGTCATATATATTAGCATATAATGCACATTCTATGAAAGATATATTCAACGTTCACCGCCTAGATTTACTGGCTGTTGCTACTTCATTCTGTTTTTCCAACCCACCGAAGGTGAATCTGAACATAGATAGCAGTGCTTCGAAGCATAGAAAGAAAATACGCAAACTGGAAGGAAAGAGAAGATGA 1635 0.4459 MAKAEDNDTTSPERQDQTKINKKKLRKRKRPNKNDHKQEEKNDAKIDSALTQTEDEEEDEEKEETKVNADDSSGIMSSESFSSLSLSEATSKAIADMGFQRMTQIQARAIPPLLDGKDVLGAARTGAGKTLAFLVPAVELLCNAQFTPLNGTGVVVICPTRELAIQTHAVAKELLKYHSQTLGLVIGGSGRKGEAERIVKGVNLLVATPGRLLDHLQNTTGFIHKNLKCLMIDEADRILEANFEEEMKQIINILPKKRQTALFSATQTKKVEDLARLSFQTTPIYIDVDDGRKRVTNEGLQQGYVVVPCAKRFVVLYSFLRRYQSKKVMVFFSSCNSVKFHADLLKCTGLDCLNIHGKQKQHARTTTFFNFCKAEKGILLCTDVAARGLDIPDVDWIVQYDPPDEPKEYIHRVGRTARGEGGKGNALLFLIPEELQFLHYLKAAKVPVKEYAFDHKKLANVQSQLEKLVAGIYHLNNMAKDAYRSYILAYNAHSMKDIFNVHRLDLLAVATSFCFSNPPKVNLNIDSSASKHRKKIRKLEGKRR* 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00176 544 CDD SF2_C_DEAD 300 430 - -
Lapu9g00176 544 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 79 107 IPR014014 GO:0003724
Lapu9g00176 544 PANTHER RNA HELICASE 34 462 - -
Lapu9g00176 544 SMART helicmild6 339 420 IPR001650 -
Lapu9g00176 544 MobiDBLite consensus disorder prediction 1 79 - -
Lapu9g00176 544 FunFam RNA helicase 296 526 - -
Lapu9g00176 544 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 110 285 IPR014001 -
Lapu9g00176 544 MobiDBLite consensus disorder prediction 1 20 - -
Lapu9g00176 544 Gene3D - 296 539 IPR027417 -
Lapu9g00176 544 SMART ultradead3 98 303 IPR014001 -
Lapu9g00176 544 MobiDBLite consensus disorder prediction 33 51 - -
Lapu9g00176 544 Pfam Domain of unknown function (DUF4217) 461 521 IPR025313 -
Lapu9g00176 544 Pfam DEAD/DEAH box helicase 103 274 IPR011545 GO:0003676|GO:0005524
Lapu9g00176 544 Gene3D - 16 289 IPR027417 -
Lapu9g00176 544 CDD DEADc_DDX18 90 287 IPR044773 GO:0003724|GO:0005524
Lapu9g00176 544 Pfam Helicase conserved C-terminal domain 315 419 IPR001650 -
Lapu9g00176 544 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 315 469 IPR001650 -
Lapu9g00176 544 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 151 441 IPR027417 -
Lapu9g00176 544 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 231 239 IPR000629 -
Lapu9g00176 544 SMART DUF4217_3 460 523 IPR025313 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00176 Lapu-Chr9 1642916 1649649 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g00176 79 438 Eukaryotic Initiation Factors Gene Family AT3G13920 31.165 3.73e-46 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00176 K13179 - gmx:100798290 936.791