Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00142 ATGGATTCTACAAGGGATGCGGGTGGTGTGGCAGGGACAGTGCTAATTCCGATGCGTTTTGTTTGGCCATATGGAGGAAGGAGTGTGTTTCTCTGTGGTTCTTTCACACGGTGGTCTGAGCTCCTACCGATGTCGCCAGTCGAAGGTTGTCCAACAGTGTTTCAAGTTATTTATAATTTGCCACCCGGTTACCATCAGTACAAGTTTTTTGTTGATGGAGAATGGCGGTATGATGAACATCAACCTTATGTGCCGGGAGAATATGGGATGGTCAACACTGTCTTCTTGGCCACGGATCCTAACTACATGCCTGTTTTGAATCCAGAGGTTGCAACTGGAAATAGCATGGATGTGGATAATGAGGCTTTCTGCCGAATGGTACGTTTGACTGACGGTACGTTGAGTGAGGTGCTACCAAGAATATCAGACGCTGATATACAAGTCTCCCGTCAGCGTATTTCTGCATTTCTGTCTTCCCACACCGCTTATGAATTACTTCCCGAGTCAGGCAAGGTTGTTGCTTTGGATGTTGATCTACCAGTGAAACAGGCATTTCATATACTGCATGAGCAGGGAATTTTCATGGCTCCTCTTTGGGACTTCTGCAAGGGGCAATTTGTTGGTGTTCTTAGTGCGTTGGATTTTATTTTAATTTTAAGAGAGCTGGGGAATCACGGGTCCAATCTGACCGAGGAGGAGCTTGAAACACATTCCATATCAGCTTGGAAAGAAGGAAAGTCTTATCTAAATAGGCAGAACAATGGACATGGAACTCTGTTTTCCAGACGTTTTATCCATTCAGGGCCTTATGATAATCTGAAAGATATTGCCGTGAAAATATTGCAAAAGGAGGTTTCAACAGTTCCTATTATCCATTCTTCTTCTGAAGATGCTTCATTTCCACAGTTACTACACCTTGCTTCACTTTCAGGAATACTTAAATGCATTTGTAGGTATTTTAGGCACTGCTCTAGTTCCTTGCCTGTACTCCAACTTCCAATCTGTGCAATACCTGTGGGCACGTGGGTGCCCAAAATTGGGGAATCAAATCGGCGACCTCTAGCAATGTTGAGACCAACCGCATCTCTTGCTTCAGCCCTAAATTTATTAGTTCAAGCCCAAGTAAGCTCAATACCTATAGTTGATGATAATGACTCATTACTGGATATATATTGTCGGAGTGACATAACAGCTTTGGCGAAGAACAGAGCATATACACATATTAATCTTGATGAAATGACTGTTCATCAGGCTTTGCAGTTGGGCCAGGACGCATATAGTCCCTATGAGCTTAGAAGTCAAAGATGTCAGATGTGTTTGCGTTCTGATTCTCTGCATAAAGTGATGGAACGCCTGGCAAATCCAGGTGTGAGGCGGCTGGTGATCGTGGAAGCTGGCAGCAAGCGTGTAGAAGGAATTGTTTCATTGAGTGACGTGTTCAAGTTCTTCTTTGGTGGTTAG 1461 0.4394 MDSTRDAGGVAGTVLIPMRFVWPYGGRSVFLCGSFTRWSELLPMSPVEGCPTVFQVIYNLPPGYHQYKFFVDGEWRYDEHQPYVPGEYGMVNTVFLATDPNYMPVLNPEVATGNSMDVDNEAFCRMVRLTDGTLSEVLPRISDADIQVSRQRISAFLSSHTAYELLPESGKVVALDVDLPVKQAFHILHEQGIFMAPLWDFCKGQFVGVLSALDFILILRELGNHGSNLTEEELETHSISAWKEGKSYLNRQNNGHGTLFSRRFIHSGPYDNLKDIAVKILQKEVSTVPIIHSSSEDASFPQLLHLASLSGILKCICRYFRHCSSSLPVLQLPICAIPVGTWVPKIGESNRRPLAMLRPTASLASALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKNRAYTHINLDEMTVHQALQLGQDAYSPYELRSQRCQMCLRSDSLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDVFKFFFGG* 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00142 486 Gene3D - 325 484 IPR046342 -
Lapu9g00142 486 Pfam CBS domain 438 483 IPR000644 -
Lapu9g00142 486 Pfam CBS domain 351 397 IPR000644 -
Lapu9g00142 486 ProSiteProfiles CBS domain profile. 349 406 IPR000644 -
Lapu9g00142 486 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 145 483 - -
Lapu9g00142 486 FunFam Sucrose nonfermenting 4-like protein 13 98 - -
Lapu9g00142 486 Gene3D - 142 324 IPR046342 -
Lapu9g00142 486 SMART cbs_1 171 220 IPR000644 -
Lapu9g00142 486 SMART cbs_1 353 401 IPR000644 -
Lapu9g00142 486 SMART cbs_1 435 484 IPR000644 -
Lapu9g00142 486 SUPERFAMILY CBS-domain pair 350 484 IPR046342 -
Lapu9g00142 486 SUPERFAMILY CBS-domain pair 152 322 IPR046342 -
Lapu9g00142 486 Pfam Glycogen recognition site of AMP-activated protein kinase 16 96 IPR032640 -
Lapu9g00142 486 Gene3D Immunoglobulins 16 106 IPR013783 -
Lapu9g00142 486 ProSiteProfiles CBS domain profile. 431 486 IPR000644 -
Lapu9g00142 486 CDD E_set_AMPKbeta_like_N 17 95 - -
Lapu9g00142 486 ProSiteProfiles CBS domain profile. 165 227 IPR000644 -
Lapu9g00142 486 SUPERFAMILY E set domains 16 97 IPR014756 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00142 Lapu-Chr9 1282420 1296207 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00142 - - gmx:100785692 939.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00243 3 2551237 2560838 Lapu9g00142 9 1282420 1296207 PCT