Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00138 ATGGAAGATAGCATTGGAGGCAGTTCCTCAAAGGACAACTGCAGCATCAAGGAACAAGACCGGTTGCTGCCAATAGCCAATGTTGGTCGGCTCATGAAGCAGATTTTGCCACACAATGCAAAAATCTCGAAGGAAGCAAAAGAAACCATGCAAGAATGTGTGTCGGAGTTCATAAGCTTTGTCACAAGTGAAGCTTCGGAGAAGTGCAGAAAGGAGAGAAGAAAGACAGTAAATGGTGATGACATTTGCTGGGCATTGGCTACTCTAGGATTTGATGACTATGCTGCACCAATGAGAAGGTACTTGCATAGATATAGAGAGGTTGAAGTAGACCATAATAATAAGGCAAATCATCATGAAAGAGGGATCAACAGCCCTCAAGAGAAGGAT 390 0.4333 MEDSIGGSSSKDNCSIKEQDRLLPIANVGRLMKQILPHNAKISKEAKETMQECVSEFISFVTSEASEKCRKERRKTVNGDDICWALATLGFDDYAAPMRRYLHRYREVEVDHNNKANHHERGINSPQEKD 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00138 130 FunFam Nuclear transcription factor Y subunit B-3 11 130 - -
Lapu9g00138 130 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 22 86 IPR003958 -
Lapu9g00138 130 ProSitePatterns NF-YB/HAP3 subunit signature. 53 69 IPR003956 GO:0005634|GO:0006355|GO:0043565
Lapu9g00138 130 MobiDBLite consensus disorder prediction 111 130 - -
Lapu9g00138 130 Gene3D Histone, subunit A 9 130 IPR009072 GO:0046982
Lapu9g00138 130 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 9 119 IPR027113 GO:0001228|GO:0006355|GO:0016602
Lapu9g00138 130 PRINTS CCAAT-binding transcription factor subunit A signature 88 106 - -
Lapu9g00138 130 PRINTS CCAAT-binding transcription factor subunit A signature 50 68 - -
Lapu9g00138 130 PRINTS CCAAT-binding transcription factor subunit A signature 69 87 - -
Lapu9g00138 130 SUPERFAMILY Histone-fold 19 120 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00138 Lapu-Chr9 1230859 1231250 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g00138 16 122 CCAAT-HAP3 Transcription Factor Family AT2G47810 76.636 5.16e-59 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Lapu9g00138 CBFD_NFYB_HMF 3.9e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00138 K08065 - gmx:100794513 216.468
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g00138 9 1230859 1231250 Lapu9g00138 9 1230859 1231250 ECH