Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00136 ATGTTTCATTCTCAACGCTTCAAACCCCTTCTTCTCTATCTGACGTCACTCACAAGAACACCTCTTCGTACCTCAAAACCTAATAATCCTTTCCCTTTCACATTCTCTCTGAAACACACCTCAACTGCTTCACAGAAACACTCTTTCACAGTTTCCTACCTCGTAAACGATCGAGGGTTCTCCCCAGAAACTGCTCTCAAGGCCTCCAAATTCGTTCAATTTGAAAACCCAGAAAAGCCCGACTCAGTCATCGCCTTCTTCAGAGACAACGGATTCAGCAACACCCAGATAAACAGCATCGTTAGAAGAGCACCCAATGTGCTCACTTGCGACCCCCACAAAAGGGTTTTTCCAAAGTTCGAGTTTTTTCTCTCCAAAGGGGCCTCACGCTCTGACATTGTGGAACTGGTGAGTAAGAGCCCCAGAATCCTTTACTCCAGCCTCGACAAAAACATTGTCCCTTCCTATGAATTGATGAGGAAGTTTCTTCGAAGTGATAAGAAAACGATGGATTGCATGCGCTCTTGTGGGCATTTTTTTGGTACTGATCGTGTGGTGCAGAATGTTAAACTTTTGGTTGATGCTGGAGTCACTGATCCTGTAATAGCCTTTTTGTTACGCAGGAGAGCTTGTATGATCTTGTCCTCTGCCTTGAAGAGGACTTTGGATGAGGTTAAGGAAATGGGGTTTGACCCTTCCAAGTTGAAGTTTGCCACCGCGATGCTGGCGAAAGTGCTCATTCCGAAATCGCGATGGGAGAGGAAAGTTGATGCCTTTAAGAGTTGGGGTTGGTCTGAAGAATTGATTCTCAGTGTGTTTAGGAGGCAACCCCTCGTAATGTTGGTGTCCCAAGATAAGATTGATAGGATTATGAGATTTTGGGTTAAGCAATTAGGTTGGGACTATTTGGCCCTTTCCAAGAAGCCAGAGATTTTTGGATTTAGTTTGGAGAGAAGGATCATCCCAAGGGCACTCGTTGTGCAGTATTTACTGAGGAAAGGTTTGAGGGGTAAGAGTGCCAGCTTGCTTACGCCATTTTCTTTTAATGAAAAGGTGTTTATTGAAAAGTTTGTCATGAGTTTTAAGGAGGAGACAAGTGAACTATTAAAGTTGTACCAAATGAGTGTTCTAGGACAAAAAGCGGACGATCAAATGGTTAACTTATGA 1167 0.437 MFHSQRFKPLLLYLTSLTRTPLRTSKPNNPFPFTFSLKHTSTASQKHSFTVSYLVNDRGFSPETALKASKFVQFENPEKPDSVIAFFRDNGFSNTQINSIVRRAPNVLTCDPHKRVFPKFEFFLSKGASRSDIVELVSKSPRILYSSLDKNIVPSYELMRKFLRSDKKTMDCMRSCGHFFGTDRVVQNVKLLVDAGVTDPVIAFLLRRRACMILSSALKRTLDEVKEMGFDPSKLKFATAMLAKVLIPKSRWERKVDAFKSWGWSEELILSVFRRQPLVMLVSQDKIDRIMRFWVKQLGWDYLALSKKPEIFGFSLERRIIPRALVVQYLLRKGLRGKSASLLTPFSFNEKVFIEKFVMSFKEETSELLKLYQMSVLGQKADDQMVNL* 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00136 388 Gene3D Transcription termination factor 3, mitochondrial 165 371 IPR038538 -
Lapu9g00136 388 SMART mt_12 302 336 IPR003690 GO:0003690|GO:0006355
Lapu9g00136 388 SMART mt_12 270 301 IPR003690 GO:0003690|GO:0006355
Lapu9g00136 388 SMART mt_12 98 129 IPR003690 GO:0003690|GO:0006355
Lapu9g00136 388 SMART mt_12 134 165 IPR003690 GO:0003690|GO:0006355
Lapu9g00136 388 SMART mt_12 202 231 IPR003690 GO:0003690|GO:0006355
Lapu9g00136 388 PANTHER CGI-12 PROTEIN-RELATED 46 362 IPR003690 GO:0003690|GO:0006355
Lapu9g00136 388 Pfam mTERF 226 353 IPR003690 GO:0003690|GO:0006355
Lapu9g00136 388 Pfam mTERF 85 219 IPR003690 GO:0003690|GO:0006355
Lapu9g00136 388 FunFam Mitochondrial transcription termination factor-like 148 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00136 Lapu-Chr9 1217716 1220472 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Lapu9g00136 mTERF 3.1e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00136 K15032 - gmx:102666739 534.643