Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00125 ATGCAGAACGAGGAAGGACAGATCACTGAGCTTTACATCCCTAGGAAGTGTTCTGCTACAAACAGATTGATTACTGCGAAAGACCATGCTTCGGTTCAGATTAACATTGGGCATGTGGATGAGAATGGTATCTACAATGGCCAATTCTCCACCTTTGCCCTTTGTGGCTTCATCCGTGCTCAGGGTGATGCTGACAGTGCCCTAGATCGCTTGTGGCAGAAGAAGAAAGTTGAAGTTAAGCAACAGTAG 249 0.4618 MQNEEGQITELYIPRKCSATNRLITAKDHASVQINIGHVDENGIYNGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVKQQ* 83
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00125 82 ProSitePatterns Ribosomal protein S21e signature. 11 19 IPR018279 GO:0003735|GO:0005840|GO:0006412
Lapu9g00125 82 PANTHER 40S RIBOSOMAL PROTEIN S21 1 81 IPR001931 GO:0003735|GO:0005840|GO:0006412
Lapu9g00125 82 FunFam 40S ribosomal protein S21 1 81 - -
Lapu9g00125 82 Pfam Ribosomal protein S21e 1 77 IPR001931 GO:0003735|GO:0005840|GO:0006412
Lapu9g00125 82 PIRSF RPS21e 1 82 IPR001931 GO:0003735|GO:0005840|GO:0006412
Lapu9g00125 82 Gene3D - 1 81 IPR038579 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00125 Lapu-Chr9 1143898 1145254 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g00125 1 81 Cytoplasmic Ribosomal Protein Gene Family AT5G27700 85.185 1.36e-52 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00125 K02971 - gmx:100817753 148.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g00125 9 1143898 1145254 Lapu9g00125 9 1143898 1145254 ECH