Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00098 ATGGCTGATAAAACAAATGGCAATGACCAACAAAGAAGGTTAGCCATTCTTGGCGTCTCTTCAATCCTCCTTGTGGCTGTGGTAGCTGCGATAGCTGTTTCTTTAAACCATGGAGATGAATCTGAAAGTGGGAGTCATGTCTCTAGTTCTCAAAGGAACAGTGTAGACATACTTTGCCATTCAACAGAATACGCGAAAACCTGCAAGAAAAGCCTTGAAAACGTTGATGACGAAACCGCAGACACAAAGATGCTGGTGAAAGCTGCGATCAATGCCACAGCGGTGGAACTTTTGAGTCACATAAAGAACTCCACCCTTTATAAAGACTTGGGGAAGGACAACATGACAAGACAAGCCCTAGATATTTGTAAGGAAGTGTTTGAGTATGCTGTTCGTGGTATTCAGCAATCTGCTGAAACAATAGACAAGTTTGAATATGGAAAGTTGAGTGAATATCTTTATGACCTAAAGGTTTGGATTGCGGGGAGTCTTTCTCACCAAATGACATGCTTGGATGGCTTTGAGAACACGACCACAAAGGCTGGTGAGACAATGATAAAGGTTTTGAATACCTCTTTGGAGCTTAGCAGCAATGCTTTGGATATGATCAATGTGGTCTCTGGTGTAATCAAGGACCTTAACATGAGCACAATTGGCAATAGGAGACTTCTCTCTGAGGACACAACACCCTTTGATGATTATCCTTCCTGGGTGAGTGAAAGGAAACGACATCTTCTTCAGACTGGAACTGAAAATCCCGATGCAGTTGTGTCCCAAGATGGGACTGGCCAGTTTACAACTCTCACTGATGCTCTTCTGTCAGTTCCCGATAACAATGCTGAACCTTTTGTGATTTACGTCAAAGCTGGTGTGTACAAGGAAATTGTGGATATGTCCATGTTAATGACCCATGTCACGATTATTGGAGATGGTCCAACAAAGACTAGATTCAGTGGCAGTTTAAACTACGATGATGGTATCCAAACTTACAAAACTGCTACTTTTGCGGTTAATGCCGCAAACTTCATGGCGAAGGATGTTGGATTTGAAAACACAGCAGGGTCTGAGAAACATCAAGCAGTGGCACTTCGAGTAACAGCAGACCAAGCTGTGTTTCTGAATTGCCACGTGGATGGGTACCAAGACACTCTATATGCTCAGTCCCAACGCCAATTCTACCGTGATTGCACAATCACTGGAACAGTTGATTTTGTGTTTGGAGATGCCGTTGGAATGTTCCAAAACTGCAAGCTAATTGTGAGAAAACCCTTGGGCAAACAACAGTGCATGGTGACAGCTGGTGGCAGAGTGAAATCTGACAGCCCCACAGCCCTAGTTTTCCAAGGTTGCCACTTCACAGGACACCCAGAAGTGACTAGCTTGAAATCCAAGGTAGCATACCTTGGAAGGCCATGGAGGGCATTCTCTAAGGTGATCATCATGGAGTCTCAAATTGACAACATCTTCTTACCAGAAGGGTACATGGCATGGATGGGAACTGAATTCATGGACACTTGTACATATTACGAGTACAATAACAGGGGCCCTGATTCTGACACAACATTGAGAGTTAAATGGCCTGGTGTTAAGGCTCTAACATCTGAAGAAGCAGCTGATTATTATCCTGCCAGATTCTTTGAACTTGCTAGTTCAGATAGTGCTGGTGATGATTGGATTGTTAGATCGAGGGTTCCTTACGCTCTTGGCCCTATGCCTTCTCATTAG 1725 0.4383 MADKTNGNDQQRRLAILGVSSILLVAVVAAIAVSLNHGDESESGSHVSSSQRNSVDILCHSTEYAKTCKKSLENVDDETADTKMLVKAAINATAVELLSHIKNSTLYKDLGKDNMTRQALDICKEVFEYAVRGIQQSAETIDKFEYGKLSEYLYDLKVWIAGSLSHQMTCLDGFENTTTKAGETMIKVLNTSLELSSNALDMINVVSGVIKDLNMSTIGNRRLLSEDTTPFDDYPSWVSERKRHLLQTGTENPDAVVSQDGTGQFTTLTDALLSVPDNNAEPFVIYVKAGVYKEIVDMSMLMTHVTIIGDGPTKTRFSGSLNYDDGIQTYKTATFAVNAANFMAKDVGFENTAGSEKHQAVALRVTADQAVFLNCHVDGYQDTLYAQSQRQFYRDCTITGTVDFVFGDAVGMFQNCKLIVRKPLGKQQCMVTAGGRVKSDSPTALVFQGCHFTGHPEVTSLKSKVAYLGRPWRAFSKVIIMESQIDNIFLPEGYMAWMGTEFMDTCTYYEYNNRGPDSDTTLRVKWPGVKALTSEEAADYYPARFFELASSDSAGDDWIVRSRVPYALGPMPSH* 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00098 574 Gene3D - 252 571 IPR012334 -
Lapu9g00098 574 PANTHER PECTINESTERASE 23 559 - -
Lapu9g00098 574 Pfam Pectinesterase 254 546 IPR000070 GO:0030599|GO:0042545
Lapu9g00098 574 SUPERFAMILY Pectin lyase-like 252 546 IPR011050 -
Lapu9g00098 574 FunFam Pectinesterase 51 207 - -
Lapu9g00098 574 Pfam Plant invertase/pectin methylesterase inhibitor 55 202 IPR006501 GO:0004857
Lapu9g00098 574 SMART PMEI_2 50 202 IPR006501 GO:0004857
Lapu9g00098 574 CDD PMEI-like_3 58 208 - -
Lapu9g00098 574 ProSitePatterns Pectinesterase signature 2. 398 407 IPR033131 -
Lapu9g00098 574 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 55 206 IPR035513 -
Lapu9g00098 574 ProSitePatterns Pectinesterase signature 1. 279 298 IPR018040 -
Lapu9g00098 574 FunFam Pectinesterase 4 251 570 - -
Lapu9g00098 574 NCBIfam pectinesterase inhibitor domain 26 205 IPR006501 GO:0004857
Lapu9g00098 574 Gene3D Invertase/pectin methylesterase inhibitor family protein 49 206 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00098 Lapu-Chr9 920588 923083 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g00098 10 569 Carbohydrate Esterase AT3G05610 43.915 4.66e-174 506
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00098 K01051 - gmx:100784682 794.653