Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00094 ATGTGTGGAGGTGCAATTATTTCAGACTTCATTGGTGTCAAGCGTGACCGCAACCTCGCCGCACAGCAACTATGGTCCGAGCTCGACCCTTTCTCTGACCTCCTCGGCTTCGACTCCTCCGCCGCCACCACCACTGCTACTTCCAAACACCAACCACCCCTCCCCGTAATTTCAGACAAAAGGGTGGAATCATGTGAGAAGAAGAAGAAAAGCGTGTGTGCAGGAAAGAAAAGTGAGCGTGCTCGCAAGAACGTGTACAGAGGAATCAGGCAAAGGCCATGGGGGAAATGGGCTGCAGAAATAAGAGACCCACACAAGGGTGTCCGCGTCTGGCTCGGCACCTTCCCCACCGCCGAGGAAGCCGCCAGAGCCTACGACGCTGCCGCCAAACGCATCCGCGGCGACAAGGCCAAACTCAACTTCCCCACCGCCACCCCGCCACCCTCCAAGAAGCGCTGCCTCAGCCCCGACCTCCCCCAGCAAAGCAGCTCCGCTTCCACCGGACCACCACCTTCCGCCTCCTTCCAAGGCGGCGAAAGCCGCGGAGGAGAGGAGCTCGATCTCAAACAGCTTGAACTGTTTCTTGGCTTAGAGAATGAGCAGCCTCTGCCCAACAATGGTGTTGAGTGGGACAACGGTTACATGATGGATGATTTGTGGATGCTCGACGACGTCGTTGTGTCCAACCGTAACCTAGTTTATTAG 705 0.5688 MCGGAIISDFIGVKRDRNLAAQQLWSELDPFSDLLGFDSSAATTTATSKHQPPLPVISDKRVESCEKKKKSVCAGKKSERARKNVYRGIRQRPWGKWAAEIRDPHKGVRVWLGTFPTAEEAARAYDAAAKRIRGDKAKLNFPTATPPPSKKRCLSPDLPQQSSSASTGPPPSASFQGGESRGGEELDLKQLELFLGLENEQPLPNNGVEWDNGYMMDDLWMLDDVVVSNRNLVY* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00094 234 PANTHER DNA-BINDING DOMAIN 53 163 IPR044808 GO:0003700|GO:0009873
Lapu9g00094 234 SMART rav1_2 85 148 IPR001471 GO:0003700|GO:0006355
Lapu9g00094 234 FunFam Ethylene-responsive transcription factor 2 84 143 - -
Lapu9g00094 234 Pfam AP2 domain 85 134 IPR001471 GO:0003700|GO:0006355
Lapu9g00094 234 CDD AP2 86 144 IPR001471 GO:0003700|GO:0006355
Lapu9g00094 234 MobiDBLite consensus disorder prediction 137 182 - -
Lapu9g00094 234 MobiDBLite consensus disorder prediction 155 174 - -
Lapu9g00094 234 SUPERFAMILY DNA-binding domain 85 143 IPR016177 GO:0003677
Lapu9g00094 234 ProSiteProfiles AP2/ERF domain profile. 85 142 IPR001471 GO:0003700|GO:0006355
Lapu9g00094 234 PRINTS Ethylene responsive element binding protein signature 108 124 IPR001471 GO:0003700|GO:0006355
Lapu9g00094 234 PRINTS Ethylene responsive element binding protein signature 86 97 IPR001471 GO:0003700|GO:0006355
Lapu9g00094 234 Gene3D AP2/ERF domain 85 144 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00094 Lapu-Chr9 842635 845034 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g00094 1 228 AP2-EREBP Transcription Factor Family AT3G16770 46.212 1.03e-52 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lapu9g00094 AP2 2.1e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00094 K09286 - gmx:100779626 305.449
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g00094 9 842635 845034 Lapu9g00094 9 842635 845034 ECH
Lapu3g00291 3 2955107 2956181 Lapu9g00094 9 842635 845034 PCT