Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00080 ATGAATCTCAGCAACGGCAAGGGATCAACTTCCAGTTCTACTCTGAAAACCGGGGATGCCGTCTCCGACCAGTTTCCGGCGGGTCTCCGGGTGATGGTGGTGGATGATGATCCCACTTGCCTTAGGATACTTGAGAGGATGCTGCATGTTTGTCTCTATGAAGTGACGAAATGCAAGCGGGCTGAGGTTGCATTGTCACTTCTGAGAGAGAACAAAAACGGGTTTGACATTGTTTTGAGCGATGTGCATATGCCAGATATGGATGGATTTAAGCTTTTGGAGCATATTGGGTTGGAGATGGACCTTCCGGTTATTATGATGTCAGCTGATGATGGAAAAAGTGTTGTGATGAAAGGGGTGACACATGGTGCCTGTGATTACCTGATTAAACCTGTGCGAATTGAGGCTTTGAAGAACATATGGCAGCATGTGATTCGGAAGAGAAAGAATGGGTTGAAAGATGTGGAGCAATCGGGTAGTGTGGAAGAAGGAGATCGGCTTCTAAAGGGATGTGATGATGGAGATTACTCATCTTCAGTGAATGAAGGCAAAAGCTCAAAGAAGAGGAGGGATGAGGAGGAGGAAGGAGATGAGAGGGATGATTCCTCCACGTTGAAGAAGCCACGAGTTGTTTGGTCTGTTGAGCTTCATCAGCAGTTTATGGCTGCTGTGAATCAACTTGGAATTGATAAGGCGGTTCCTAAAAAGATTTTGGAATTGATGAATGTTCCTGGGCTCACTAGAGAAAATGTTGCTAGCCACCTCCAGAAATACCGGTTGTATCTTCGAAGACTGAGTGGAGTGTCACAGCAGCAAGGTAACTTGAACAACTCCTTCATCAGCTCACAAGAAGCAACATTTGGGGCAACCTCAATCAATGGAATTGATCTTCAAACTCTTTCAGTTGCTGGCCAGCTTCCAGCACAAAGTCTATCCAGGCTTCAAGCCGCAGCACTTGGCAGGACAACTGCTAAAGCTGGTGTCTCTATGCCTCTATCTGATCAAAAAAACCTTTTCAGTTTTGAGAACCCAAGATTGAGATTTGCAGAAGGGTCACTACATCATTTAAGCAACAGTAAACCGATAAACTTGCTTCATGGAATTCCTACCAACATGGAGCCAAAACAACTTGTCAATTTGCACCAATCTACCCAAACCCTTGGTAACTTGAACATGCGAGTCAATGCTCCTGCTGCGCAGAACAACCCCTTGTTGATGCAGATGGCTCAGTCTCAACCAAGAGGTCAGATGCTAAGTGAAAATGCTGATTCTCATGTAACCAGGTTTCCGTCATCTTTGGTTCAGCCTACAGTACCAAATGGTATTTCTAATGGTGTTTTGGGAAATAGGATTACTGGCACCAGCAACATAACTACTGCTTATAATACAGTTCCACAAAACTCTTCATTGTTGAGTTTTCCCATGAACCAAACCAATGAAATGTCTGTCAGTAGTTTTCCTCTTAGAAGCACTCCGGGTATAACTGGTATCCCAACTAAAGGCATGTTTCATGAAGAAGGTTCCTCTGGTATTAAAGGACCTGGTGGATTTGTTCCAACTTATGACATGTTTAATGAACTCCACCATCAGAAGTCCCATGATTGGGACTTAACAAACACAAGCATAACATATGATTCTTCTCAGCATGCGAATCCTTTACAAGGTAATTTTGATGTCTCACCATCAGTTTTAGTCCATCAGGGTTTTCCCTGTATGCAACAATCTGTACAAACTAGAGATACCACTTCAATTGGAAAAGCTCTGTTCTCCACAGAGGAAGGTATACATCAAGGTAATCTCCAAAATGTTGGTCAACACCTCAATAACCTTGTTGACAATTCAGTAAGGGTTAAGGCTGAAAGATTTTCTGATCCAAGCTCCCAGATTAATAATCTCTTCTCTGATCAGTATGGGCAGGAGGATCTTGTCACTGCATTTCTGAAACAGCAAGAAGGTGTAGGACCATCTGGTAATGATTTAGACTTTGATGGATATTCCTTAGACAACATTCCGGTTTAG 2019 0.4324 MNLSNGKGSTSSSTLKTGDAVSDQFPAGLRVMVVDDDPTCLRILERMLHVCLYEVTKCKRAEVALSLLRENKNGFDIVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADDGKSVVMKGVTHGACDYLIKPVRIEALKNIWQHVIRKRKNGLKDVEQSGSVEEGDRLLKGCDDGDYSSSVNEGKSSKKRRDEEEEGDERDDSSTLKKPRVVWSVELHQQFMAAVNQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSQQQGNLNNSFISSQEATFGATSINGIDLQTLSVAGQLPAQSLSRLQAAALGRTTAKAGVSMPLSDQKNLFSFENPRLRFAEGSLHHLSNSKPINLLHGIPTNMEPKQLVNLHQSTQTLGNLNMRVNAPAAQNNPLLMQMAQSQPRGQMLSENADSHVTRFPSSLVQPTVPNGISNGVLGNRITGTSNITTAYNTVPQNSSLLSFPMNQTNEMSVSSFPLRSTPGITGIPTKGMFHEEGSSGIKGPGGFVPTYDMFNELHHQKSHDWDLTNTSITYDSSQHANPLQGNFDVSPSVLVHQGFPCMQQSVQTRDTTSIGKALFSTEEGIHQGNLQNVGQHLNNLVDNSVRVKAERFSDPSSQINNLFSDQYGQEDLVTAFLKQQEGVGPSGNDLDFDGYSLDNIPV* 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00080 672 MobiDBLite consensus disorder prediction 152 204 - -
Lapu9g00080 672 MobiDBLite consensus disorder prediction 152 172 - -
Lapu9g00080 672 Pfam Response regulator receiver domain 31 139 IPR001789 GO:0000160
Lapu9g00080 672 Gene3D - 29 160 - -
Lapu9g00080 672 FunFam Two-component response regulator 29 166 - -
Lapu9g00080 672 PIRSF RR_ARR_type-B 6 662 IPR017053 GO:0003677|GO:0003700|GO:0009736
Lapu9g00080 672 ProSiteProfiles Response regulatory domain profile. 30 145 IPR001789 GO:0000160
Lapu9g00080 672 MobiDBLite consensus disorder prediction 182 204 - -
Lapu9g00080 672 CDD REC_typeB_ARR-like 31 145 - -
Lapu9g00080 672 SMART REC_2 29 141 IPR001789 GO:0000160
Lapu9g00080 672 SUPERFAMILY Homeodomain-like 204 264 IPR009057 -
Lapu9g00080 672 FunFam Two-component response regulator 203 266 - -
Lapu9g00080 672 Pfam Myb-like DNA-binding domain 209 259 IPR001005 -
Lapu9g00080 672 NCBIfam myb-like DNA-binding domain, SHAQKYF class 207 260 IPR006447 GO:0003677
Lapu9g00080 672 Gene3D - 204 266 - -
Lapu9g00080 672 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 206 263 IPR017930 -
Lapu9g00080 672 PANTHER TWO-COMPONENT RESPONSE REGULATOR 29 368 IPR045279 GO:0009736
Lapu9g00080 672 SUPERFAMILY CheY-like 28 149 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00080 Lapu-Chr9 721682 725715 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g00080 63 672 Response Regulator Gene Family AT3G16857 49.541 3.35e-174 509
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Lapu9g00080 Response_reg 8.7e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00080 - K14491 gmx:100809583 1142.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g00080 9 721682 725715 Lapu9g00080 9 721682 725715 ECH
Lapu3g00313 3 3125451 3130204 Lapu9g00080 9 721682 725715 PCT