Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00069 ATGATGGCACACGACTTAACAGGGCAGCTTGTGGGTTCAGAGATACATGGGTTTCATACGTTGCAGGATCTGGATGTTAGTAATACTATGGAGGAAGCAAAAAGCAGATGGCTTCGTCCAAATGAGATTCATGCCATACTCTGTAATCACAAATATTTCAAGATCAATGCCAAGCCAGTGCATTTGCCCGAAAGTGGTACTATTGTACTATTTGACCGCAAGATGCTTAGAAACTTCAGAAAAGATGGGCACAACTGGAAAAAGAAAAGTGATGGGAAAACTGTTAAAGAAGCTCACGAACACTTAAAAGTCGGCAATGAAGAAAGGATCCATGTATACTATGCTCATGGCCAAGATAACCAATCCTTTGTTCGTAGATGTTATTGGTTGCTTGATAAGAGTTTGGAGCACATAGTCCTTGTTCATTATCGGGAAACAAGAGAGATACAATTGCAAAGTTCTCCTGTTACACCTGTAAATTCAAATTCAAGTTCTGTCTGTGATCCAGCTGCATCTTGGATTCCATCAGAAGACTTAGATTCTGGGACGAACAGTGCTTACACTACTGTCAAAAGTCATGAACAGAAGCTTCATGAGATTAATACACTTGAATGGGATGACCTAGTGGTTTCAAATGTCAACACTAATACTACATCTAATGGAGGCAATGTTCCACGTTTATATCAACAAAATCAAAGTTTACTGAGTGGAAGCTTTGGCAATGCATCCAGTAATCCTTCAGCAGAAGTTCCTTCTTTTGGCTTGCAAAGCCAGGACAGCTTTGGAATGTGGATGAACAACAACATCATATCAGAGACACCATGTTCCATAGACGAGTCAGCTCTTGAAACATCAATTTCTTCTGTTCGTGAACCCTATTCATCACTGGTGGCAGATAATCAGCTATCTTCTCTGCCTGAACAAGTATTTAATGTCACAGAGGTGTCCCCTGCGTGGGCATCTTCCTCTGAGAAAACAAAGGTCCTGGTAACTGGATATTTTCATAGTAACTATCAACACCTTGCAAAGCTCAACCTAGTGTGTGTCTGTGGTGATGTAAGTTTTCCTGTAGAAATTGTTCAGGTTGGGGTTTACCGATGCTGGATATCACCACACTCCCCTGGATTGGTCAATATCTATTTGAGCTTTGATGGCCACAAGCCTATTAGCCAAGTTATTAATTTTGAGTATCGTACTCCCATTTTGCATGATCCAACTGCTTCAATGGAAGAGAAATACAACTGGAATGAATTTCGACTTCAGATGAGGCTTGCTCATTTGCTCTTTTCTACAGACAAGACCCTTGATATTTTCTCAAGTACAGTATCACTAAAGGCACTAAAAGAGGCTAGAAGATTTTCCTTCAAAACATCATTTATCTCCAAAAGCTGGCAGTACTTGATGAAGTCAATTGACGACAAAACATCTCCATTTCAACAAATAAAAGATAACTTGTTTGAAATTGCATTGAAAAACAAATTAAAGGAATGGCTTTTAGACCGAATTGTCATAGGTAGCAAGAGTACTGAATTTGATGCGCAAGGGCAAAGTGTAATTCATTTGTGTGCAATGCTTGGATATAATTGGGCAATCTCCTTGTTTTCTTGGTCAGGCTTGTCACTGGATTTCCGTGACAAATTTGGATGGACAGCTCTTCATTGGGCAGCCTATTATGGAATGGAGAAAATGGTTGCAACTCTGCTGTCTGCTGGGGCAAGGGCAAATGTGGTCACAGATCCAACTCCACAAAATCCTGGTGGATGTACTGCTGCTGATCTTGCTTTTATGAAGGGGTATGAGGGCTTAGCTGCTTACCTTTCCGAAAAGTCTCTGGTTGGGCAGTTCAATGACATGAGCTTAGCTGGAAATATCAGTGGCACACTGGAAACTGGCTCAACTGATCCAGCAATTACTGAAGACCTTACTGAGGACCAGCTGTACTTAAAGGAGACATTGGCAGCTTACAGGACGGCTGCTGGGGCAGCAGCACGCATTCAAGCTGCATACAGGGAGCATTCACTAAATTTACGATACAAGGCAGTTGAATTTAGCAGCCCAGAGGATCAAGCACGTCATATAGTAGCAGCAATGAGGATTCAACACGCCTTTCGCAACTACGAGACAAGGAAATCGATGGCAGCTGCTGCTCGAATTCAGCATAGATTCCGTACATGGAAATACCGTAGAGAATTTCTTCACATGCGGCGTCAGGCTATTAAAATTCAAGCTGCTTTCAGGGGCTTTCAAGTCCGGAGGCAATATAAAAAGATCATATGGTCTGTTGGGGTGCTAGAGAAAGCAATTCTGCGTTGGCGGTTAAAGAGAAAAGGCTTCCGCGGTCTACAGGTTAATCCTGCAGAGGATCAGAAGCCGGAAAACAGTGCGGAGGAGGACTTCTATTGGACCGGCCGGAAACAAGCCGAAGAACGGGTTGAGAGGTCTGTTGTACGTGTGCAGGCCATGTTCCGTTCTAAGAAAGCACAAGAAGAATATAGAAGAATGAAGCTAGCACATAATCAAGCAAAGCTGGATCTGGAATTTGAAGATTTCCTCACTTCTGAAGTTGACATGTTACCCAACATATAG 2586 0.423 MMAHDLTGQLVGSEIHGFHTLQDLDVSNTMEEAKSRWLRPNEIHAILCNHKYFKINAKPVHLPESGTIVLFDRKMLRNFRKDGHNWKKKSDGKTVKEAHEHLKVGNEERIHVYYAHGQDNQSFVRRCYWLLDKSLEHIVLVHYRETREIQLQSSPVTPVNSNSSSVCDPAASWIPSEDLDSGTNSAYTTVKSHEQKLHEINTLEWDDLVVSNVNTNTTSNGGNVPRLYQQNQSLLSGSFGNASSNPSAEVPSFGLQSQDSFGMWMNNNIISETPCSIDESALETSISSVREPYSSLVADNQLSSLPEQVFNVTEVSPAWASSSEKTKVLVTGYFHSNYQHLAKLNLVCVCGDVSFPVEIVQVGVYRCWISPHSPGLVNIYLSFDGHKPISQVINFEYRTPILHDPTASMEEKYNWNEFRLQMRLAHLLFSTDKTLDIFSSTVSLKALKEARRFSFKTSFISKSWQYLMKSIDDKTSPFQQIKDNLFEIALKNKLKEWLLDRIVIGSKSTEFDAQGQSVIHLCAMLGYNWAISLFSWSGLSLDFRDKFGWTALHWAAYYGMEKMVATLLSAGARANVVTDPTPQNPGGCTAADLAFMKGYEGLAAYLSEKSLVGQFNDMSLAGNISGTLETGSTDPAITEDLTEDQLYLKETLAAYRTAAGAAARIQAAYREHSLNLRYKAVEFSSPEDQARHIVAAMRIQHAFRNYETRKSMAAAARIQHRFRTWKYRREFLHMRRQAIKIQAAFRGFQVRRQYKKIIWSVGVLEKAILRWRLKRKGFRGLQVNPAEDQKPENSAEEDFYWTGRKQAEERVERSVVRVQAMFRSKKAQEEYRRMKLAHNQAKLDLEFEDFLTSEVDMLPNI* 862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00069 861 SUPERFAMILY Ankyrin repeat 489 609 IPR036770 -
Lapu9g00069 861 ProSiteProfiles IQ motif profile. 812 840 IPR000048 GO:0005515
Lapu9g00069 861 SMART CG_1_2 30 147 IPR005559 GO:0003677
Lapu9g00069 861 ProSiteProfiles CG-1 DNA-binding domain profile. 26 152 IPR005559 GO:0003677
Lapu9g00069 861 ProSiteProfiles Ankyrin repeat region circular profile. 547 576 - -
Lapu9g00069 861 ProSiteProfiles IQ motif profile. 711 740 IPR000048 GO:0005515
Lapu9g00069 861 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 25 839 - -
Lapu9g00069 861 SMART ANK_2a 586 617 IPR002110 GO:0005515
Lapu9g00069 861 SMART ANK_2a 547 576 IPR002110 GO:0005515
Lapu9g00069 861 Coils Coil 824 844 - -
Lapu9g00069 861 SMART iq_5 733 755 IPR000048 GO:0005515
Lapu9g00069 861 SMART iq_5 691 713 IPR000048 GO:0005515
Lapu9g00069 861 SMART iq_5 810 832 IPR000048 GO:0005515
Lapu9g00069 861 Gene3D - 710 758 - -
Lapu9g00069 861 Pfam CG-1 domain 32 145 IPR005559 GO:0003677
Lapu9g00069 861 ProSiteProfiles IQ motif profile. 692 721 IPR000048 GO:0005515
Lapu9g00069 861 Pfam Ankyrin repeats (3 copies) 489 576 IPR002110 GO:0005515
Lapu9g00069 861 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 658 761 IPR027417 -
Lapu9g00069 861 ProSiteProfiles Ankyrin repeat profile. 547 579 IPR002110 GO:0005515
Lapu9g00069 861 FunFam Calmodulin-binding transcription activator 2 711 758 - -
Lapu9g00069 861 FunFam calmodulin-binding transcription activator 5 477 617 - -
Lapu9g00069 861 SUPERFAMILY E set domains 311 398 IPR014756 -
Lapu9g00069 861 FunFam Calmodulin-binding transcription activator 5 306 402 - -
Lapu9g00069 861 Pfam IQ calmodulin-binding motif 736 755 IPR000048 GO:0005515
Lapu9g00069 861 Gene3D Immunoglobulins 306 401 IPR013783 -
Lapu9g00069 861 ProSiteProfiles IQ motif profile. 734 758 IPR000048 GO:0005515
Lapu9g00069 861 Gene3D - 472 614 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00069 Lapu-Chr9 596896 609404 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g00069 30 844 CAMTA Transcription Factor Family AT3G16940 57.403 0.0 934
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Lapu9g00069 CG-1 4.9e-45 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00069 K21596 - gmx:100819198 1422.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g00069 9 596896 609404 Lapu9g00069 9 596896 609404 ECH
Lapu3g00323 3 3221013 3230405 Lapu9g00069 9 596896 609404 PCT