Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00052 ATGTCAGAAGGTGCAGAAATTGATGAGCGAGTGGACCTTGATGAGGAGAATTTTATGGAAGAGATGGATGATGATGTTGAAGAACAAATAGATGACGATGGGGTGGACGGCGGTGAAGATGAAAATGCTGAAGGTAGTGTTGAGGAACATGAATATGAGGACTCGACAGCAGAGGTTGGTGGGAAGGACCAGTTACCTGAAGCAGAAAAAAGTGACATTGCCACTGAATTTGGTGATGATGATCAAAAACCATCTTTCATTGACGAAGATGAGAAAGAGAAGCATGACGAACTTCTTGCCCTTCCACCACATGGTTCCGAAGTCTTTATTGGTGGACTTCCTCGGGATGTATGTGAAGATGATTTAAGGGATTTGTGCGAGCCGATAGGTGATATTCTTGAGGTGCGGTTAATGAAAGACAGGGACACTGGAGAAAACAAGGGTTATGCCTTTGTTGCTTTTAAAACAAAAGAGGTAGCACAAAAGGCAATTGAGGAGATACATAGCAGGGAATTTAAGGGAAAAACTTTGAGGTGTTCACTTTCTGAAACCAAACACAGATTATTCATTGGTAATGTTCCAAAAACTTGGACGGAAGATGACTTTAGGAAAGTCATTGAAGGAGTTGGTCCTGGAGTTGAAAACATCGAGCTCATCAAGGACCCTCAAAATCCTAGTAGGAATCGTGGATTTGCTTTTGTTTTGTATTACAATAATGCATGTGCTGATTATTCACGGCAAAAGATGTCAAGTGCAAGTTTTAAGCTGGATGGCAATACCCCCACTGTCACGTGGGCAGATCCAAAGAACTCTCCTGATCATTCTGCTTCTGCGCAGGTTAAAGCTCTGTACGTCAAAAACATACCAGAGAATGTTACCACTGAACAATTGAAGGAACTATTCCGTCGCCATGGTGAGGTAACAAAAGTGGTCATGCCACCTGGCAAAGCTGGAGGGAAACGCGATTTTGGTTTCATTCATTATGCAGAGAGGTCAAGTGCATTGAAAGCTGTAAAAGATACTGAGAAATATGAAATTGATGACCAAGTGCTTGAAGTTGTTCTTGCCAAGCCTCAAGCTGATAAAAAGCCTGATGGAGGGTATGGCTACAATCCTGGACTGCATCCAAACCATCTTCCTCATCCTGCATATGGTAACTTTTCTGGAAATCCTTATGGCTCTTTAGGGGCTGGATATGGTGTTGGTGGTGGTTATCAACAGCCAATGATATATGGTAGGGGTCCAATGCCGGCAGGAATGCAAATGGTTCCAATGGTGTTACCAGACGGTCGAATTGGCTATGTCCTTCAACAACCTGGTGTACAAGCGCCACCTAGCCGACCTCGCAGAATTGATAGGAGTAATGGGCCAAGTGGGCAGCCAGGGCGAGGAGGAGGTAGTGGCACTGATGAAGGCAATCGTAGTAGAAGGTATCGACCCTATTAG 1446 0.4412 MSEGAEIDERVDLDEENFMEEMDDDVEEQIDDDGVDGGEDENAEGSVEEHEYEDSTAEVGGKDQLPEAEKSDIATEFGDDDQKPSFIDEDEKEKHDELLALPPHGSEVFIGGLPRDVCEDDLRDLCEPIGDILEVRLMKDRDTGENKGYAFVAFKTKEVAQKAIEEIHSREFKGKTLRCSLSETKHRLFIGNVPKTWTEDDFRKVIEGVGPGVENIELIKDPQNPSRNRGFAFVLYYNNACADYSRQKMSSASFKLDGNTPTVTWADPKNSPDHSASAQVKALYVKNIPENVTTEQLKELFRRHGEVTKVVMPPGKAGGKRDFGFIHYAERSSALKAVKDTEKYEIDDQVLEVVLAKPQADKKPDGGYGYNPGLHPNHLPHPAYGNFSGNPYGSLGAGYGVGGGYQQPMIYGRGPMPAGMQMVPMVLPDGRIGYVLQQPGVQAPPSRPRRIDRSNGPSGQPGRGGGSGTDEGNRSRRYRPY* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00052 481 Gene3D - 269 407 IPR012677 -
Lapu9g00052 481 FunFam Heterogeneous nuclear ribonucleoprotein Q isoform A 8 186 - -
Lapu9g00052 481 SMART rrm1_1 187 264 IPR000504 GO:0003723
Lapu9g00052 481 SMART rrm1_1 282 354 IPR000504 GO:0003723
Lapu9g00052 481 SMART rrm1_1 107 180 IPR000504 GO:0003723
Lapu9g00052 481 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 184 IPR000504 GO:0003723
Lapu9g00052 481 MobiDBLite consensus disorder prediction 8 48 - -
Lapu9g00052 481 MobiDBLite consensus disorder prediction 1 86 - -
Lapu9g00052 481 SUPERFAMILY RNA-binding domain, RBD 103 271 IPR035979 GO:0003676
Lapu9g00052 481 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 13 445 - -
Lapu9g00052 481 MobiDBLite consensus disorder prediction 438 481 - -
Lapu9g00052 481 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 187 267 - -
Lapu9g00052 481 Gene3D - 9 186 IPR012677 -
Lapu9g00052 481 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 186 268 IPR000504 GO:0003723
Lapu9g00052 481 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 178 IPR000504 GO:0003723
Lapu9g00052 481 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 188 254 IPR000504 GO:0003723
Lapu9g00052 481 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 283 351 IPR000504 GO:0003723
Lapu9g00052 481 MobiDBLite consensus disorder prediction 49 86 - -
Lapu9g00052 481 SUPERFAMILY RNA-binding domain, RBD 276 373 IPR035979 GO:0003676
Lapu9g00052 481 CDD RRM_SF 108 180 - -
Lapu9g00052 481 Gene3D - 187 267 IPR012677 -
Lapu9g00052 481 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 281 358 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00052 Lapu-Chr9 421622 428342 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g00052 108 412 Eukaryotic Initiation Factors Gene Family AT1G71770 27.035 3.34e-17 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00052 K13161 - gmx:100790907 850.892