Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00044 ATGGCACCCAATGCCACTTCCTTTCTCTCATTCACATCTTCTTCCTCCTTACCCTTACCCTTATTCAACCACAATCTCCATACCCTATTCAGATCTTCTAACAAACCATTCCTTTCCTTTTCCAAGGCTACGACTTTCTCCTTCACCGCCTCGGCCGCCACCATGGATAAAGCAAGCGTCGTTCACGGAGGAGCTCATGCGGAGAAAGAAACCTTCAAGCAACCAAGACCAACCGAAGTCTACATCTGCAACCTTCCAAGAACCTGTGACATACAACATCTGCTTCACATGTTCAACCCTCATGGAACCGTACTCTCTGCTCAGGTTTGCCGGAGTGAGGAGACTGGTGAGAGTAGAGGGAGTGCTTATGTCACAATGGCATCTATTGACTCTGCAAAAAAGGCAATTGCTGCATTGGATGCATTGGATGTTGGTGGGCGCGAAGTGCTGGTTAGATTTTCGGCTGAGATGAATCCCAAGAGGAGAAATCTTGACACAATGAATTCGTTACCCATGAGAACTATATACTATGAAGGTCCTTATAGATTGTATGTTGGGAATCTTTCCAAGTTTACTACGCCTGAAGACCTGAGGCAGCTTTTTTGTAGATTTGGTAATGTGACTAGTGTAAGGGTGTTGCAAGATATGAGACATGGGAAACAAAGGGTCTACGCGTTTGTCTCTTATCTTTCAGGGAGAGAACGTGATGCAGCATTGTCTCTCCATGGAACGGTTCTTTGCGGTCGAACACTAGTGATTAGAGAGCGTGTAAAGAGTGAGGAATAA 786 0.4555 MAPNATSFLSFTSSSSLPLPLFNHNLHTLFRSSNKPFLSFSKATTFSFTASAATMDKASVVHGGAHAEKETFKQPRPTEVYICNLPRTCDIQHLLHMFNPHGTVLSAQVCRSEETGESRGSAYVTMASIDSAKKAIAALDALDVGGREVLVRFSAEMNPKRRNLDTMNSLPMRTIYYEGPYRLYVGNLSKFTTPEDLRQLFCRFGNVTSVRVLQDMRHGKQRVYAFVSYLSGRERDAALSLHGTVLCGRTLVIRERVKSEE* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00044 261 Gene3D - 49 167 IPR012677 -
Lapu9g00044 261 Gene3D - 168 261 IPR012677 -
Lapu9g00044 261 SUPERFAMILY RNA-binding domain, RBD 72 163 IPR035979 GO:0003676
Lapu9g00044 261 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 181 258 IPR000504 GO:0003723
Lapu9g00044 261 PANTHER OS02G0815200 PROTEIN 20 254 - -
Lapu9g00044 261 SMART rrm1_1 79 152 IPR000504 GO:0003723
Lapu9g00044 261 SMART rrm1_1 182 254 IPR000504 GO:0003723
Lapu9g00044 261 SUPERFAMILY RNA-binding domain, RBD 176 256 IPR035979 GO:0003676
Lapu9g00044 261 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 183 251 IPR000504 GO:0003723
Lapu9g00044 261 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 80 149 IPR000504 GO:0003723
Lapu9g00044 261 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 78 156 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00044 Lapu-Chr9 381143 384231 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g00044 78 261 Eukaryotic Initiation Factors Gene Family AT3G16380 29.319 7.48e-14 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00044 - - pvu:PHAVU_009G258000g 407.912