Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00042 ATGGGTGAAGAAGCGGGCGTGATGCAGACGCAGGGGGAACAGAGCAACAATGCCTCCACGGTTCGGTGGGAACGTTTTCTGCCTCGGATGGTGCTTCGTGTGTTGCTTGTCGAAGCTGATGATTCTACTAGACAGATCATTGCTGCACTTCTCCGTAAATGCAGTTACAAAGTTGCCACAGTTTGTGATGGCTTAAAGGCGTGGGAGACATTGAAGAACAAAGCATCTGACATAGATCTCATATTAACTGAAGTGGATCTGCCATCAATATCTGGATTTTCACTTCTTAGTTTAATCATGGAGCATGACGTTTGCAAAAACATTCCCGTTATAATGATGTCTTCTCATGATTCAGTTCGCATGGTGTTCAGATGCATGTTAAAAGGTGCAGCTGATTTTCTTATAAAACCTGTTCGCAAGAATGAGCTAAGAAACTTGTGGCAGCATGTGTGGAGAAGGCATGTCATTGAACTTGGTTTTGCTGCAGAAAACCAAGCTGCAAGCAATGATTCTAGCGGTTCTGTGGCTTCTACACCAAAACATAATGAATGCAGCGAGAAAACAAGTGAGGCTCAAGATATTTCACAGCTGAAGAGTTCTTCAAATTTGAGCCATATTGGCACAGTTAAGCATGAAAACTCTTCAAAATGTGAAAGGGAATCAGATAAACGTAATGACGAAGCTGGAGCCAAATCAATATTTATATCAGAAGATGAAGGGTGCAACAAAACTTTTAAACCAACAGGTTTAAGGCTAGGTCAAGGCTGTGATTGTGGTGAAATGAGAAATCAGGATGAAGTTCTAAGAATAGAGTTGAGCAAAGCCGATCCTGAGATTAATGGCAATATGCATGGATGCAGTGATGAATTGGAAGGTCCCTCTAGGGGGGCCATTGACTTGATTGGTACATTCAAGACTCTTCCAAAGAGCACTGATGAAAAATTTAGTTTCAGTAGTGGTAACGGTGCCAAGTTTGACTTTGATACACAATTGGAACTTTCTATAAGAAGATATTTTCCTGGAAGCTCATACAAAGCTGCATTTGAGGAAAGGCAAATATGGAACCATTCAAATGCTTCTGCGTTTTCTAGGTATGGTAGTAAGCTGTTGCAGCCCCTTTGTCCAACACCATCAACTGTCTCTGCAAAATTAACAAATGCTAGTCATAATTCTCAGAAATCCAATAAGTTATCTGAAAATGCATCTGCTTCTCATCAATATGGTGCAAAAAATCAAATTCAGGAGAAAATCACCACTCCAGAGATTGGTCAATCTCGACAAGTTGATCCAAAATTACCAGATAGTCAACTTGGATTCCTTCCTGCTACAGGGGTTACTTATGATCACAAATCTACTGGAAATGGAAATTTCTTCCCTTCTATGCTTTATTCTCAATCAGGTGTCCATCCCATATGGACTCCAAAATCAGTGTTTCAGAAAGAGAGTTCTCCATTTCCCACAAGTACTTCTTCCCAGTCTAATCCTCGAAGTCGCAACTCAAAACGTCATCACTGGTCAGATGATGCATCCCATGCTTCTGATAAAAATGTAAATGATCAAAGCAATTTGGATTGCGAGACACAGGACTCTCCTACAGCTAGTCAAAGTGCTGATACTGCTCTTTACCATGATACAGCAAATCGTAATTGTAGTGGTGTATGCAGAAGCATAGGCTGCACAAGTGGTGGAAATGTTACTTCAGCTAAGGTAGCCAAGGACAACCATGAAAGTTTCATTGATAGTGGTTACCTTGGTTATGATGGATCCATAGGGACAGATTCTCATCGCACCAGCCAAAGAGAAGCAGCTCTAACAAAGTTTCGACTTAAGCGGAAGGATAGATGCTATGAGAAAAAGGTCCGATATCAAAGCCGGAAGAGATTGGCAGAGCAGCGCCCTCGGGTGAAAGGGCAATTTGTTCGCCAAGTACACAGTGATCGTCCGGTAGCAGATCTGGGTGGTGATTCCTGA 1971 0.4186 MGEEAGVMQTQGEQSNNASTVRWERFLPRMVLRVLLVEADDSTRQIIAALLRKCSYKVATVCDGLKAWETLKNKASDIDLILTEVDLPSISGFSLLSLIMEHDVCKNIPVIMMSSHDSVRMVFRCMLKGAADFLIKPVRKNELRNLWQHVWRRHVIELGFAAENQAASNDSSGSVASTPKHNECSEKTSEAQDISQLKSSSNLSHIGTVKHENSSKCERESDKRNDEAGAKSIFISEDEGCNKTFKPTGLRLGQGCDCGEMRNQDEVLRIELSKADPEINGNMHGCSDELEGPSRGAIDLIGTFKTLPKSTDEKFSFSSGNGAKFDFDTQLELSIRRYFPGSSYKAAFEERQIWNHSNASAFSRYGSKLLQPLCPTPSTVSAKLTNASHNSQKSNKLSENASASHQYGAKNQIQEKITTPEIGQSRQVDPKLPDSQLGFLPATGVTYDHKSTGNGNFFPSMLYSQSGVHPIWTPKSVFQKESSPFPTSTSSQSNPRSRNSKRHHWSDDASHASDKNVNDQSNLDCETQDSPTASQSADTALYHDTANRNCSGVCRSIGCTSGGNVTSAKVAKDNHESFIDSGYLGYDGSIGTDSHRTSQREAALTKFRLKRKDRCYEKKVRYQSRKRLAEQRPRVKGQFVRQVHSDRPVADLGGDS* 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00042 656 MobiDBLite consensus disorder prediction 500 514 - -
Lapu9g00042 656 MobiDBLite consensus disorder prediction 626 641 - -
Lapu9g00042 656 ProSiteProfiles Response regulatory domain profile. 33 151 IPR001789 GO:0000160
Lapu9g00042 656 MobiDBLite consensus disorder prediction 386 431 - -
Lapu9g00042 656 MobiDBLite consensus disorder prediction 386 436 - -
Lapu9g00042 656 MobiDBLite consensus disorder prediction 211 228 - -
Lapu9g00042 656 MobiDBLite consensus disorder prediction 626 656 - -
Lapu9g00042 656 CDD psREC_PRR 34 137 - -
Lapu9g00042 656 MobiDBLite consensus disorder prediction 168 228 - -
Lapu9g00042 656 SMART REC_2 32 147 IPR001789 GO:0000160
Lapu9g00042 656 MobiDBLite consensus disorder prediction 189 210 - -
Lapu9g00042 656 ProSiteProfiles CCT domain profile. 600 642 IPR010402 GO:0005515
Lapu9g00042 656 Pfam Response regulator receiver domain 34 145 IPR001789 GO:0000160
Lapu9g00042 656 Gene3D - 30 237 - -
Lapu9g00042 656 MobiDBLite consensus disorder prediction 515 536 - -
Lapu9g00042 656 MobiDBLite consensus disorder prediction 168 182 - -
Lapu9g00042 656 MobiDBLite consensus disorder prediction 479 536 - -
Lapu9g00042 656 Pfam CCT motif 600 642 IPR010402 GO:0005515
Lapu9g00042 656 SUPERFAMILY CheY-like 32 159 IPR011006 -
Lapu9g00042 656 PANTHER TWO-COMPONENT RESPONSE REGULATOR 32 388 IPR045279 GO:0009736
Lapu9g00042 656 MobiDBLite consensus disorder prediction 479 496 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00042 Lapu-Chr9 370445 376217 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g00042 585 645 Response Regulator Gene Family AT5G24470 75.410 1.22e-21 97.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Lapu9g00042 Response_reg 4.8e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00042 K12130 - gmx:100779346 1030.39