Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00033 ATGGAGGATGGAAGTAGGGTTCCACCGGGGGATGACCCCTCTTACTGGCTGGATGCGTGTGAGGATATATCATGTGATTTTATTGATTTTGATGTCTCGTCCATAGTGTCAGAGCAACCTGACAACCCTTCCAATCAGGACTTCTTCGGTGGCATTGATAAGATTTTGGACAGCATAAAAAACGGTGCTGGTCTCCCTCTGAATCATGGCGAACCTGCTTCCAACTCTAATGGCACAGCGGCAGCAGCAGCAGGAGAAGTCTGGTTTCCCTCCAATGGCACTTTGGCGGATGGGGGAAATCATCATGCTCATGCTCCTGTTCCTGCTCCCACTGATGCTGCTTTTGACCATTCTGCTACTGTTAGGAATAATGGGTCGAGTAAGCTGTGTAATGGGAACGAAGGGGGAGTTTTGGTTAATTGTTCTCAGGAAAGAGGGGTTCTGAATGGCGGCCATGATGTTGATAGTGAAGAAAGGTGCAGCAAAAGGGCCCGGCTTGGTGGTTACAAGAATGAGAGGCCTCATTATGGTAGAGGAAATTATCAAGGCAAGGAGAGGGAGAGGTGTTATAATAATAACAGAAAGAGGCCTCGGGATAGGGATGAGGTTGATAGGAGGGATAGGGACGGTGGTGGAAGGAAACGAGAACATTATGGTGCTGTTGGCAGGAGGGATGTTAGAGATAGAGATTGGAGGGATAGAGAACCTAGGGGTTACTGGGAGAGGGATAAGTCAGGTAACAATGACATGGTCTTTCGCCCGGGTGCTTGGGAACCTGACCGTAATCGAGAAGAAAAAATGGCTAATGATTTGAAACAAGAGAGCAATGGAAAACTTGATAAGAAATCTGAGGAGGCTAAGGAGAAGGTTCCTGAGGAAAAAGCTAGACAGTATCAATTAGATGTTCTTGACCAGGCAAAGAGGAAAAATACTATAGCTTTCCTTGAAACTGGAGCAGGGAAAACCTTAATTGCTGTTCTTCTCATTAAAAGTATACACGAGAGTTTGCAGAAGCAAAATAAGAAAATGCTTGCAGTATTTTTAGTTCCAAAAGTTCCACTAGTTTACCAGCAAGCCGAAGTAATTCGTGAGCGTACTGGTTATCAAGTAGGTCACTATTGTGGAGAAATGGGACAGGATTTCTGGGATGCTCGAAGGTGGCAGCGTGAATTCGATACCAAACATGTTTTAGTCATGACCGCTCAAATTCTTTTGAACATTTTGAGGCATAGCATAATAAAAATGGAAGCAATCAATCTCTTGATTCTGGATGAGTGCCACCATGCTGTGAAGAAACACCCATATTCACTGGTGATGTCCGAGTTCTACCATACAACACCCAAAGAGAAGAGGCCATCTGTATTTGGAATGACTGCTTCTCCTGTTAACTTGAAGGGTGTCTCCAGCCAAGTAGATTGTGCAATAAAAATTCGCAATCTTGAAAGTAAGCTAGATTCTATAGTTTGCACCATTAAAGATCGGAAGGAGCTGGAGAAACATGTGCCGATGCCCTCTGAAGTTGTGGTGGAGTATGATAAAGCTGCCAGTTTATGTTATCTACATGAGCAGATAAAGCAGATGGAGGTTGAAGTCGAAGAAGCTGCAAAATCTAGTTCAAGAAGAAGCAAATGGCAGTTTATGGGAGCTAGAGATGCTGGAGCTAAGGAAGAGCTGCGCCAAGTATATGGTGTTTCTGAAAGAACAGAAAGTGATGGAGCTGCAAACCTAATTCAGAAGTTGAGAGCTGTTAATTATGCACTTGGTGAACTGGGACAATGGTGTGCATACAAGGTTGCACAATCCTTTTTAGCAGCTTTGCAAAATGATGAAAGGGCCAACTACCAACTTGATGTCAAGTTTCAGGAATCTTATTTGAGTAAAGTTGTTTCTCTTCTGAAATGCCAACTGTCAGAGGGTGCAGTTTCTGACAAAAATGCTGATATTGATGACCCAGAGAATGGTGCAGCTCAAAGTGTTTCTGAACATGAAGAGATGGAAGAAGGGGAACTTCCAGACACTCATGTTGTCTCTGGCGGAGAGCACGTGGATGTCATTATAGGAGCTGCTGTGGCTGATGGCAAGGTGACCCCCAAGGTGCAGGCACTAATCAAAATACTTCTCAAGTATCAGCATACAGAAGACTTCCGTGCAATCATCTTTGTTGAGCGTGTTGTGTCTGCGTTAGTTCTGCCCAAGGTCTTTGCAGAGCTTCCATCTCTTAGTTTTGTTAAGTGTGCAAGCTTGATTGGTCACAATAACAGTCAGGAAATGCGGACCCACCAAATGCAAGATACAATTTCCAAATTCCGTGATGGGCGGGTCACATTGTTAGTTGCCACTAGTGTTGCTGAAGAAGGACTTGATATCCGGCAATGCAACGTTGTTATTCGGTTTGACCTTGCAAAGACTGTTTTGGCATACATTCAATCCAGGGGACGTGCTAGAAAACCTGGATCTGATTACATCCTGATGGTGGAGAGGGGCAATTTGTCACATGAAGCATTCCTAAGGAATGCCAGGAACAGTGAAGAGACTTTGCGCAAAGAAGCAATAGAGAGAACAGACCTTAGTCATTTGAAGGACACTTCACGATTGATTTCTGTTGACACCAGGCCTGGAACAGTTTACCAGGTGAAGTCAACTGGTGCAGTTGTGAGTCTTAATTCTGCTGTAGGTCTTATCCACTTCTATTGCTCTCAGCTACCTAGTGACAGATATTCAATTCTTCGTCCTGAGTTTATTATGGAGAGGCATGAAAAAACAGGAGGTCCCACAGAATATTCTTGCAAGCTTCAACTGCCCTGTAATGCACCATTTGAAAATCTCGAGGGCCCAATATGCAGTTCTATGCGTCTGGCACAACAGGCTGTTTGTCTGGCTGCTTGCAAGAAACTGCATGAGATGGGAGCATTCACCGACATGCTATTGCCTGATAAAGGAAGTGGTGGAGAAAGAGAAAAGGATGAGCAAACTGATGAAGGAGATCCACTTCCAGGGACTGCTAGACATAGGGAGTTCTATCCTGAAGGTGTGGCTGACATACTGAAGGGAGAATGGATCTTATCTGGAAAAGATGATTGCAAAAACTCCAAATTGCTTCATCTTTACATGTATGCTGTGAAGTGCGAAAATATAGGCCACTCAAAGGATCCGTTCTTGATTCAAGTTTCAAATTTTGCAGTACTTTTTGGCAATGAGCTGGATGCAGAGGTGTTATCGATGTCAATGGATCTATTTATCGCTCGAACCGTGACTACAAAGGCATCTCTTGTCTTTATGGGGTCAATAAATATTACTGAGAGTCAGCTGGCATCCCTGAAAAGCTTTCATGTAAGATTGATGAGCATTGTCTTGGATGTGGATGTTGAACCATCTACCACTCCTTGGGATCCTGCAAAGGCATATTTGTTTGTCCCAATGTTTGGCGATAAGTCTGTAGATCCTATGAACCAAATTGACTGGCGTCTGGTTGAGACAATAATTGGAGCCGATGCATGGAAGAATCCCCTCCAGAAAGCTCGACCAGATGTTTACCTTGGTACTAACGAGAGAACATTAGGTGGAGATAGAAGGGAATATGGATTTGGGAAATTGCGGCATGGCATGGCTTTTGGGCAAAAATCACATCCCACCTATGGAATCAGAGGAGCTGTGGCCCAGTTTGATGTGGTGAAAGCTTCAGGATTGGTTCCTAGTAGAGATTCCACGCAAACACAAAAGCAAATTAATACGACTACCAATGGAAAATTGATGATGGCAGATACCTGTACTAATGCGGAGGATTTGGTAGGGAAAATTGTAACTGCTGCTCATTCGGGGAAGAGGTTTTATGTTGATTCAATACGCTATGACATGTCAGCAGAGAACTCTTTCCCTAGGAAAGAAGGTTATCTTGGTCCTCTGGAGTACAGCTCATATGCTGATTACTACAAGCAAAAGTATGGAGTTGATTTGATTTACAAGCAGCAACCTCTAATAAGAGGGCGTGGTGTATCATACTGCAAGAATCTTCTGTCCCCTCGATTTGAGCACAGTGAAGCACATGAAGGCGAATCTGATGAGACACATGACAAAACTTATTATGTTTTTCTCCCTCCTGAGCTATGCCTTGTACACCCACTGCCTGGATCACTTGTTCGTGGTGCCCAGAGGTTGCCTTCAATAATGAGGAGGGTTGAAAGTATGCTACTTGCAGTTCAGCTGAAGAATATGATAAATTATCCTGTCCAGACTTCAAAGATCTTGGAAGCCTTGACCGCAGCCTCTTGCCAGGAGACATTCTGCTATGAAAGGGCAGAGCTTCTTGGAGATGCTTACCTTAAATGGGTTGTTAGTCGATTTCTTTTCTTAAAATACCCACAGAAACATGAAGGTCAACTTACTAGGATGAGACAACAAATGGTCAGTAACATGGTATTATATCAGTATGCATTAAGTAGAGGGCTTCAATCATATATTCAGGCAGATCGCTTTGCTCCATCCAGATGGGCAGCTCCTGGGGTGCTGCCTGTCTTTGATGAAGATACCAAGGATGGGGAGTCCTCTTTGTTTGACCAGGAGCGTTCCATTTCTAAAACTGAGAAGATGGATTGTCACACAGATGGATATGATGATGAGATGGAAGATGGCGAGCTTGAGAGTGATTCAAGTTCTTACAGAGTTCTTTCCAGTAAGACACTTGCAGATGTTGTGGAAGCACTGATTGGGGTATATTATGTAGAAGGTGGGAAAAATGCTGCTAATCACCTTATGAAATGGATTGGCATTCAAATAGAGTTTGATCCCGATACGGTGGAGTGTGCAAGAAAGCCATTTAATGTTCCAGACAGCATACTTAGGAGCGTTGATTTTGACGCTTTAGAGGGTGCTTTAAATATAAAGTTTAAAGACAAGGGGCTGTTGGTAGAATCCATAACACATGCCTCCAGACCATCTTCAGGAGTATCCTGTTATCAGCGGTTGGAATTCGTTGGTGATGCTGTCTTGGATCATCTTATCACCAGGCACTTGTTTTTCACTTACACAAATCTTCCACCTGGACGTCTGACTGATCTTCGGGCTGCTGCTGTAAATAATGAAAATTTTGCACGAGTTGCAGTTAAACACAGCCTTCATGTGCATCTCCGACATGGGTCCAGTGCCTTAGAGAAACAGATTAAAGAATTTGTGAAGGAAGTTCAAGATGAATTGTCAAAGCCAGGTTTTAACTCCTTTGGTCTGGGAGACTGCAAAGCTCCCAAGGTCCTTGGTGACATTGTTGAATCTATTGCAGGTGCCATTTTTCTTGACAGTGGAAGGGATACTACTGTTGTTTGGAAGGTTTTTCAGCCTCTTCTGCATCCTATGGTTACCCCAGAGACTCTGCCAATGCATCCTGTGCGAGAGCTGCAGGAGCGATGCCAACAGCAAGCTGAAGGTTTAGAGTATAAAGCAAGTCGTATTGGCAATTTGGCCACTGTTGAAGTATTCATTGATGGGGTGCAAGTAGGAGCTGCTCAAAATCCACAGAAAAAAATGGCACAGAAATTAGCTGCCAGAAATGCTCTTGCTGCTTTGAAAGAGAAGGAGGTGGGAAAAACTCAGGAGAAGAATGATGAAAACGGGAAAAAGAATGGAAACCAGACATTTACTAGGCAAACATTAAATGATATCTGTTTACGAAGAAATTGGCCTATGCCATTCTACAGGTGTGTGAATGAGGGTGGTCCAGCACATGCAAAGAGATTTACATTTGCGGTGCGTGTCAATACTACTGATAGAGGATGGACGGATGAATGTGTTGGAGAGCCAATGCCAAGCGTCAAGAAGGCCAAAGACTCAGCAGCCGTTCTTCTCTTAGAACTACTAAACAAATTATACTCGTGA 5865 0.4373 MEDGSRVPPGDDPSYWLDACEDISCDFIDFDVSSIVSEQPDNPSNQDFFGGIDKILDSIKNGAGLPLNHGEPASNSNGTAAAAAGEVWFPSNGTLADGGNHHAHAPVPAPTDAAFDHSATVRNNGSSKLCNGNEGGVLVNCSQERGVLNGGHDVDSEERCSKRARLGGYKNERPHYGRGNYQGKERERCYNNNRKRPRDRDEVDRRDRDGGGRKREHYGAVGRRDVRDRDWRDREPRGYWERDKSGNNDMVFRPGAWEPDRNREEKMANDLKQESNGKLDKKSEEAKEKVPEEKARQYQLDVLDQAKRKNTIAFLETGAGKTLIAVLLIKSIHESLQKQNKKMLAVFLVPKVPLVYQQAEVIRERTGYQVGHYCGEMGQDFWDARRWQREFDTKHVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTPKEKRPSVFGMTASPVNLKGVSSQVDCAIKIRNLESKLDSIVCTIKDRKELEKHVPMPSEVVVEYDKAASLCYLHEQIKQMEVEVEEAAKSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAVNYALGELGQWCAYKVAQSFLAALQNDERANYQLDVKFQESYLSKVVSLLKCQLSEGAVSDKNADIDDPENGAAQSVSEHEEMEEGELPDTHVVSGGEHVDVIIGAAVADGKVTPKVQALIKILLKYQHTEDFRAIIFVERVVSALVLPKVFAELPSLSFVKCASLIGHNNSQEMRTHQMQDTISKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMVERGNLSHEAFLRNARNSEETLRKEAIERTDLSHLKDTSRLISVDTRPGTVYQVKSTGAVVSLNSAVGLIHFYCSQLPSDRYSILRPEFIMERHEKTGGPTEYSCKLQLPCNAPFENLEGPICSSMRLAQQAVCLAACKKLHEMGAFTDMLLPDKGSGGEREKDEQTDEGDPLPGTARHREFYPEGVADILKGEWILSGKDDCKNSKLLHLYMYAVKCENIGHSKDPFLIQVSNFAVLFGNELDAEVLSMSMDLFIARTVTTKASLVFMGSINITESQLASLKSFHVRLMSIVLDVDVEPSTTPWDPAKAYLFVPMFGDKSVDPMNQIDWRLVETIIGADAWKNPLQKARPDVYLGTNERTLGGDRREYGFGKLRHGMAFGQKSHPTYGIRGAVAQFDVVKASGLVPSRDSTQTQKQINTTTNGKLMMADTCTNAEDLVGKIVTAAHSGKRFYVDSIRYDMSAENSFPRKEGYLGPLEYSSYADYYKQKYGVDLIYKQQPLIRGRGVSYCKNLLSPRFEHSEAHEGESDETHDKTYYVFLPPELCLVHPLPGSLVRGAQRLPSIMRRVESMLLAVQLKNMINYPVQTSKILEALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLYQYALSRGLQSYIQADRFAPSRWAAPGVLPVFDEDTKDGESSLFDQERSISKTEKMDCHTDGYDDEMEDGELESDSSSYRVLSSKTLADVVEALIGVYYVEGGKNAANHLMKWIGIQIEFDPDTVECARKPFNVPDSILRSVDFDALEGALNIKFKDKGLLVESITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFTYTNLPPGRLTDLRAAAVNNENFARVAVKHSLHVHLRHGSSALEKQIKEFVKEVQDELSKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRDTTVVWKVFQPLLHPMVTPETLPMHPVRELQERCQQQAEGLEYKASRIGNLATVEVFIDGVQVGAAQNPQKKMAQKLAARNALAALKEKEVGKTQEKNDENGKKNGNQTFTRQTLNDICLRRNWPMPFYRCVNEGGPAHAKRFTFAVRVNTTDRGWTDECVGEPMPSVKKAKDSAAVLLLELLNKLYS* 1955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00033 1954 Pfam PAZ domain 1246 1393 IPR003100 GO:0005515
Lapu9g00033 1954 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 342 829 IPR027417 -
Lapu9g00033 1954 Gene3D - 688 854 IPR027417 -
Lapu9g00033 1954 SUPERFAMILY RNase III domain-like 1616 1787 IPR036389 GO:0004525|GO:0006396
Lapu9g00033 1954 Gene3D paz domain 1248 1371 - -
Lapu9g00033 1954 Pfam Helicase conserved C-terminal domain 698 815 IPR001650 -
Lapu9g00033 1954 CDD DSRM_DCL_plant 1882 1943 - -
Lapu9g00033 1954 Gene3D Dicer dimerisation domain 885 986 IPR038248 -
Lapu9g00033 1954 SMART helicmild6 731 817 IPR001650 -
Lapu9g00033 1954 CDD DEXHc_dicer 294 493 - -
Lapu9g00033 1954 FunFam Endoribonuclease dicer-like 1 689 851 - -
Lapu9g00033 1954 CDD RIBOc 1412 1594 IPR000999 GO:0004525|GO:0006396
Lapu9g00033 1954 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1791 1854 IPR014720 -
Lapu9g00033 1954 FunFam endoribonuclease Dicer homolog 1 1882 1951 - -
Lapu9g00033 1954 FunFam Endoribonuclease dicer-like protein 290 530 - -
Lapu9g00033 1954 Pfam Ribonuclease III domain 1652 1765 IPR000999 GO:0004525|GO:0006396
Lapu9g00033 1954 Pfam Ribonuclease III domain 1430 1576 IPR000999 GO:0004525|GO:0006396
Lapu9g00033 1954 Gene3D - 1789 1867 - -
Lapu9g00033 1954 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 302 479 IPR014001 -
Lapu9g00033 1954 SMART PAZ_2_a_3 1237 1397 IPR003100 GO:0005515
Lapu9g00033 1954 SUPERFAMILY RNase III domain-like 1389 1594 IPR036389 GO:0004525|GO:0006396
Lapu9g00033 1954 CDD RIBOc 1633 1788 IPR000999 GO:0004525|GO:0006396
Lapu9g00033 1954 PANTHER DICER-RELATED 1245 1856 - -
Lapu9g00033 1954 FunFam Endoribonuclease dicer-like protein 1395 1588 - -
Lapu9g00033 1954 MobiDBLite consensus disorder prediction 256 294 - -
Lapu9g00033 1954 ProSiteProfiles Ribonuclease III family domain profile. 1617 1765 IPR000999 GO:0004525|GO:0006396
Lapu9g00033 1954 MobiDBLite consensus disorder prediction 1855 1875 - -
Lapu9g00033 1954 FunFam Endoribonuclease dicer-like 1 1612 1786 - -
Lapu9g00033 1954 Gene3D - 289 533 IPR027417 -
Lapu9g00033 1954 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 890 985 IPR005034 GO:0016891
Lapu9g00033 1954 FunFam Endoribonuclease dicer-like 1 885 986 - -
Lapu9g00033 1954 SMART riboneu5 1412 1596 IPR000999 GO:0004525|GO:0006396
Lapu9g00033 1954 SMART riboneu5 1632 1788 IPR000999 GO:0004525|GO:0006396
Lapu9g00033 1954 SMART DRBM_3 1792 1853 IPR014720 -
Lapu9g00033 1954 SMART DRBM_3 1877 1950 IPR014720 -
Lapu9g00033 1954 SUPERFAMILY PAZ domain 1253 1373 IPR036085 GO:0005515
Lapu9g00033 1954 CDD PAZ_CAF_like 1226 1375 - -
Lapu9g00033 1954 Pfam Type III restriction enzyme, res subunit 300 461 IPR006935 GO:0003677|GO:0005524|GO:0016787
Lapu9g00033 1954 SMART ultradead3 291 494 IPR014001 -
Lapu9g00033 1954 Gene3D - 1882 1952 - -
Lapu9g00033 1954 FunFam Endoribonuclease Dicer 1 1253 1371 - -
Lapu9g00033 1954 SUPERFAMILY dsRNA-binding domain-like 1747 1873 - -
Lapu9g00033 1954 SUPERFAMILY dsRNA-binding domain-like 1880 1950 - -
Lapu9g00033 1954 CDD SF2_C_dicer 695 825 - -
Lapu9g00033 1954 Pfam Dicer dimerisation domain 890 978 - -
Lapu9g00033 1954 MobiDBLite consensus disorder prediction 976 1003 - -
Lapu9g00033 1954 ProSitePatterns Ribonuclease III family signature. 1652 1660 IPR000999 GO:0004525|GO:0006396
Lapu9g00033 1954 ProSiteProfiles PAZ domain profile. 1233 1373 IPR003100 GO:0005515
Lapu9g00033 1954 MobiDBLite consensus disorder prediction 979 1003 - -
Lapu9g00033 1954 MobiDBLite consensus disorder prediction 1855 1869 - -
Lapu9g00033 1954 Gene3D Ribonuclease III domain 1394 1590 IPR036389 GO:0004525|GO:0006396
Lapu9g00033 1954 Gene3D Ribonuclease III domain 1613 1786 IPR036389 GO:0004525|GO:0006396
Lapu9g00033 1954 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1876 1951 IPR014720 -
Lapu9g00033 1954 ProSiteProfiles Ribonuclease III family domain profile. 1416 1576 IPR000999 GO:0004525|GO:0006396
Lapu9g00033 1954 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 702 862 IPR001650 -
Lapu9g00033 1954 MobiDBLite consensus disorder prediction 165 221 - -
Lapu9g00033 1954 Pfam double strand RNA binding domain from DEAD END PROTEIN 1 1876 1949 - -
Lapu9g00033 1954 MobiDBLite consensus disorder prediction 643 670 - -
Lapu9g00033 1954 MobiDBLite consensus disorder prediction 237 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00033 Lapu-Chr9 307527 321577 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g00033 714 857 Eukaryotic Initiation Factors Gene Family AT5G11200 29.252 2.15e-06 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00033 K11592 - gmx:100811631 3532.65