Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00032 ATGGACTTGATACAACAAGTTAAAGGCAATTATTCTGATAGCAGGGAGGAAGAGGAGGAAGAGGAAGTAGCAGAGATTATCGGCATCACAAGAGAACCAGAAAGCAGCAGGTTACACCAGCTAGATGCGGCTTCCAATTTTGGAAAGAAGCTAGACTTGATGGAGTTGTCACTAGGGAGCAACAAGGAAGAGGAAGAGGAGGGCAATTTGCAACAAGGAGGAGGGGGAGGAGCGGTTCTTCATCATCAACAACAGCATGAACATCAACAACAACAAAATCATCATCATCATGACAGTCACGGAACTTCAAACACGAAGGAAGTAGTGGAGAAAGAGCACATGTTTGACAAAGTGGTGACACCAAGCGATGTGGGAAAGCTGAACAGGCTGGTGATACCGAAGCAGCATGCAGAGAAGTACTTCCCCCTTGATTCCTCCTCCAACGAGAAGGGTCTGCTCCTGAATTTCGAGGACCGGAACGGGAAGGTGTGGCGGTTCAGATATTCCTATTGGAACAGCAGCCAGAGCTATGTGATGACAAAAGGGTGGAGCCGTTTCGTGAAGGAGAAGAAGTTGGATGCAGGTGACATTGTCTCCTTCCAGCGTGGCCTTGGCGACATGGATAGACATAGGTTGTACATAGATTGGAGGAGAAGGTCTGATCATGCCCATCCTCCCTCTGATCCCTCAACCTCTCCTTTGTTTCTTCCCTCTATCAGATGGTACTCCCTTCCCGCCACCTCCCCCATTGTGCCACCACGCTACCACCATGATCATCGTTTTCACCATCTCAATTACAACAACCTCTTCACTTTTCAGCAGCAACACCAGTACCTTGGTCATGCTCATGCTCATGCTCATGCTCATGCTCATGGGGCTGCCACTGCCACTGCCACTGCCGCTGCTCCTCATCATCACAACAACTATGGCGAACATAATTCGGGATCTGGGACTGGCTCACTCTATTATCTCAGGTCCTCTATGTCAATGAGTGGTGGTGGTGATCAAAACATGGGAGGAAGAGGGAATAGCATTTTGCCCATGATCATCGATTCTGTACCGGTCAACGTGGGTCATCATAACCATCGTCATGGGTATGGTGGCATGACGAGTGGTGGTGCTAGTGCTAGCACAAGTAGTGGAAAACGACTAAGGCTATTTGGGGTGAACATGGAGTGTGCCTCTTCGACAGAAGATTCTAAAGACTTGTCTTTGGGTTCGGCAGCGCATGTCACAGTGGGTAATTCACTTTCTTCTTCTTCGTCTCTCCAGCAACGCTTGAGGATGCCCCATGAAGACTCGCTTTCTTCTTCAGCAAGGTTTGGGGATCACAAAAGCGGGACTGGAACTTCTCTGCTGTTTGATTTGGATCCCTCCTTGCAGTATCAGCACTAG 1395 0.4889 MDLIQQVKGNYSDSREEEEEEEVAEIIGITREPESSRLHQLDAASNFGKKLDLMELSLGSNKEEEEEGNLQQGGGGGAVLHHQQQHEHQQQQNHHHHDSHGTSNTKEVVEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSSNEKGLLLNFEDRNGKVWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGLGDMDRHRLYIDWRRRSDHAHPPSDPSTSPLFLPSIRWYSLPATSPIVPPRYHHDHRFHHLNYNNLFTFQQQHQYLGHAHAHAHAHAHGAATATATAAAPHHHNNYGEHNSGSGTGSLYYLRSSMSMSGGGDQNMGGRGNSILPMIIDSVPVNVGHHNHRHGYGGMTSGGASASTSSGKRLRLFGVNMECASSTEDSKDLSLGSAAHVTVGNSLSSSSSLQQRLRMPHEDSLSSSARFGDHKSGTGTSLLFDLDPSLQYQH* 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00032 464 Gene3D - 108 226 IPR015300 -
Lapu9g00032 464 MobiDBLite consensus disorder prediction 1 20 - -
Lapu9g00032 464 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 81 402 IPR044800 GO:0003700
Lapu9g00032 464 MobiDBLite consensus disorder prediction 416 443 - -
Lapu9g00032 464 MobiDBLite consensus disorder prediction 87 107 - -
Lapu9g00032 464 MobiDBLite consensus disorder prediction 60 107 - -
Lapu9g00032 464 SUPERFAMILY DNA-binding pseudobarrel domain 112 221 IPR015300 -
Lapu9g00032 464 MobiDBLite consensus disorder prediction 416 432 - -
Lapu9g00032 464 ProSiteProfiles B3 DNA-binding domain profile. 115 220 IPR003340 GO:0003677
Lapu9g00032 464 CDD B3_DNA 113 202 IPR003340 GO:0003677
Lapu9g00032 464 FunFam B3 domain-containing protein 108 228 - -
Lapu9g00032 464 SMART B3_2 115 220 IPR003340 GO:0003677
Lapu9g00032 464 Pfam B3 DNA binding domain 115 219 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00032 Lapu-Chr9 289205 293517 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g00032 105 396 RAV Transcription Factor Family AT2G46870 48.993 7.77e-75 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lapu9g00032 B3 1.3e-29 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00032 K09287 - gmx:100812161 540.036