Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00024 ATGAGTGAGCCGACTGACACTCTGGGTGAATCCCCCGCCGTCGCGTTGATCGGAAAGATAATGATAATCGTTGTAATAATCTTCTTCTTCCTTGTTGTAATTGCTCTCGGCGTTCATCTCTTCTCTAGAAACTTCTGGTGGCGCAACCCTGCTCCCCAATCACGACGCCGCCGCCGCTTTGTGTTTTCCACCGGTCAAGACGGTGGTCATCGAAGGGGACTGGATCCCTCCGTGCTGAGCTCCATACCCGTGTTGGTATTCCAAGGCCAAGACTTCAAGGATGGTTTGGAATGTGCGGTTTGCCTCTCGGAGGTCGTGGAAGGAGAAAAGGCCAGGCTTTTGCCTAAGTGCAACCATGGGTTTCACGTTGGTTGTATTGACATGTGGTTCCAATCCCATTCTACCTGCCCTCTTTGCAGAAACTCTGTTGCTGTTCAATCCGATGAAAGTAGCAGTAGTGCACACAACTCAGAATCAGAGTCCCCAACTTTTCCCACTAACGTCTTGGTTTGGGGTGATCACACTCAAATAACTTCTACCGCTGGTGCTTCTTCGGAGGAAGGTGCTTCTCAGCCACCTCGCCCCTCCTCATCTTCTTCCGCTGCTACTTGTGATGATGATAGTAACAACAGCAATAGACGTCAGGGAACGTTGGTGATTGACATACCAAGTCATGCCACTTCGACTTCTTTGTCGCCTTCTGCAAGCAGGTTTGCTGAAGATGACTTGAAATCACCATTGACGGGAAAACTGAGGTCATTGAAGAGGCTTCTGAGCAGGGACAGAAGGTTAAATCCTTGGAGTCCTACTTCTGTAGATGTAGAACAGGCAGCTAATCCAGGGGGAGGGGGACACAGCTGA 861 0.5006 MSEPTDTLGESPAVALIGKIMIIVVIIFFFLVVIALGVHLFSRNFWWRNPAPQSRRRRRFVFSTGQDGGHRRGLDPSVLSSIPVLVFQGQDFKDGLECAVCLSEVVEGEKARLLPKCNHGFHVGCIDMWFQSHSTCPLCRNSVAVQSDESSSSAHNSESESPTFPTNVLVWGDHTQITSTAGASSEEGASQPPRPSSSSSAATCDDDSNNSNRRQGTLVIDIPSHATSTSLSPSASRFAEDDLKSPLTGKLRSLKRLLSRDRRLNPWSPTSVDVEQAANPGGGGHS* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00024 286 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 11 207 - -
Lapu9g00024 286 ProSiteProfiles Zinc finger RING-type profile. 98 140 IPR001841 -
Lapu9g00024 286 SMART ring_2 98 139 IPR001841 -
Lapu9g00024 286 MobiDBLite consensus disorder prediction 179 236 - -
Lapu9g00024 286 Pfam Ring finger domain 97 140 IPR001841 -
Lapu9g00024 286 MobiDBLite consensus disorder prediction 179 247 - -
Lapu9g00024 286 SUPERFAMILY RING/U-box 78 146 - -
Lapu9g00024 286 CDD RING-H2_EL5-like 97 140 - -
Lapu9g00024 286 FunFam RING-H2 finger protein ATL3 66 145 - -
Lapu9g00024 286 MobiDBLite consensus disorder prediction 261 286 - -
Lapu9g00024 286 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 145 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00024 Lapu-Chr9 230024 230884 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g00024 17 265 C3H Transcription Factor Family AT1G53820 40.404 1.94e-61 195
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00024 - - gmx:100797420 295.434