Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00020 ATGTGGTGGAGATCAGCATCATTCATCATGGACAGGCAGCAGAACGAAGCTGCTCTCAAGGGAGACACCATCGCTCCAACCGACTCCTCAATATCAAACCCTAACCCCAACCCTAAGACCTCTGCCTACTATGAGACCAGAGCAGCGCACCACGGCGTCGTCACCAGCGACTGGCTGGCCCAGGCTCAGGCCGCCATTGGGCCGGACCCTGACCCTCTACCTCAACTCAGGCCCGATCCTGACCAGCCCTTCAGCGTCATCGACGAGTTTAATAACTGGCGCAAACAGCCCCATTTGGCGGAGGCCGTCGCCGCCATTCGCGCCCTGGCCGCCGTCATAAGATCCAGCCAGGCTACCACCATGATGCAGCTGGAAATCGAGCTGAAGAAAGCCTCCGATTCTCTTAAGTCGTGGGATGCGACCTCTATCTCTTTGACAGCGGGCTGTGATCTCTTTATGCGATATGTCACTCGGACTTCTGCTTTAGAATACGAAGACTTCAATTCCGCTAAATCTCGCTTGATTGAGCGTGCTGAGAAGTTCGGCGAAATCTCCTACAAGGCCCGCAAAGTTATTGCAATGTTGAGTCAGGATTTTATATTTGATGGTTGTACAATTTTGGTTCATGGTTTTTCCAGAGTTGTCTTTGAAGTCCTCAAACTGGCTGCGCAAAACAAAAAATTATTTCGGGTCTTCTGCACAGAGGGAAGACCAGATCGAACAGGATTGCGGTTGTCCAATGAGCTGGCCAAGCTTGATGTTCCTGTGAAACTACTAATAGATTCTGCCGTCGCATATAGTATGGATGAGGTGGACATGGTTTTTGTAGGTGCAGATGGAGTCGTGGAAAGTGGGGGCATAATCAACATGATGGGGACATACCAAATTGCATTGGTTGCACACGGTATGAATAAACCAGTTTATGTCGCTGCTGAAAGCTACAAGTTTGCTCGCCTCTACCCTCTTGACCAAAAGGATTTAGCCCCTGCTTTACGCCCTATTGATTTTGGTGTACCTATTCCATCCAAGGTTGAGGTTGAAAGGTCCGCGCGGGACTACACCCCTCCTCAATACCTGACTTTGCTTTTCACAGATTTAGGTGTTCTTACTCCATCTGTTGTTAGTGATGAGCTGATCCAGCTATACTTATAG 1152 0.4957 MWWRSASFIMDRQQNEAALKGDTIAPTDSSISNPNPNPKTSAYYETRAAHHGVVTSDWLAQAQAAIGPDPDPLPQLRPDPDQPFSVIDEFNNWRKQPHLAEAVAAIRALAAVIRSSQATTMMQLEIELKKASDSLKSWDATSISLTAGCDLFMRYVTRTSALEYEDFNSAKSRLIERAEKFGEISYKARKVIAMLSQDFIFDGCTILVHGFSRVVFEVLKLAAQNKKLFRVFCTEGRPDRTGLRLSNELAKLDVPVKLLIDSAVAYSMDEVDMVFVGADGVVESGGIINMMGTYQIALVAHGMNKPVYVAAESYKFARLYPLDQKDLAPALRPIDFGVPIPSKVEVERSARDYTPPQYLTLLFTDLGVLTPSVVSDELIQLYL* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00020 383 PANTHER TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT ALPHA 50 383 - -
Lapu9g00020 383 Pfam Initiation factor 2 subunit family 98 371 IPR000649 GO:0044237
Lapu9g00020 383 Coils Coil 121 141 - -
Lapu9g00020 383 MobiDBLite consensus disorder prediction 20 42 - -
Lapu9g00020 383 FunFam Translation initiation factor eIF-2B subunit alpha 187 383 - -
Lapu9g00020 383 Gene3D - 186 383 IPR042529 -
Lapu9g00020 383 FunFam Translation initiation factor eIF-2B subunit alpha 82 184 - -
Lapu9g00020 383 SUPERFAMILY NagB/RpiA/CoA transferase-like 98 382 IPR037171 -
Lapu9g00020 383 Gene3D - 82 184 IPR042528 -
Lapu9g00020 383 MobiDBLite consensus disorder prediction 25 42 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00020 Lapu-Chr9 201100 204427 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g00020 1 383 Eukaryotic Initiation Factors Gene Family AT1G53880 80.563 0.0 608
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00020 K03239 - gmx:100799015 669.848