Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00018 ATGTGTGGTGGAGCTATTATCTCTGACTTTATTCCGGCGGCGGTCACGGCCAGGTCTCGCCGGCTCACCGCCGGTTACCTGTGGCCGGATTTGAAGAAGCGGGCATCTGAGGTCATCCACTCGGACGAGGACTTCGAGGCTGATTTTAGGGATTTCAAGGACGATTCCGACATCGAAATCGACAGCGAGGCTGACCACCGAGTCAAACCCTTTGCTTTCTCCGCATCTTCTCGGCCTTGGGCAGTGAAATCTGTGGCACTCAAAGGTGGAGCTGAGAAGTCTGCAAAGAGGAAGAGGAAGAATCAATATAGGGGAATTCGTCAACGTCCTTGGGGAAAATGGGCAGCTGAGATCAGGGATCCAAGCAAGGGTGTTCGTGTCTGGCTTGGAACCTTCAACACTGCTGAAGAAGCTGCAAGAGCTTATGATGCTGAAGCACGGAGGATTCGTGGCAAGAAAGCTAAGGTGAATTTCCCAGAGGAAGCTTCCGTGAAACGTTCCAAGGTAAATCTACTGGGAAATCAGAAGACTGTTCAACCCAATGTCCACAAGTTCAATGCTGACAACAATCAGAAGGACCTTTGTTGTCCTATGGATCTGGTGGAACAGAAACCCCTAGTTAACCAGTTTGCTAACATGGGTTCCTTCCCTGGAAGTGGGAATGGGCTCAGATCTCTTCCTTCGTCTGATGATGTGACCCTTTACTTCAGTTCAGATCAGGGGAGTAATTCATTTGATTATGCAGATCTCGGGTGGAGTGAACAGGCTCCTCAAACTCCTGAGATCTCATCCATGCTTTCTGCTCCTTTGGATTGTGATTCTCATTTTGTACAGGATGCCAACCATCAGACTAACTCTCAGGATGTGGTATCTATGCAAGATGATTTATCCAAGACACTCTCTGAGGAGCTTGTGGATATTGAATCTGAGTTGAAGTTCTTTCAGATGCCTTATCTTGAAGGGAGCTGGGATGATGCTTCATTGGAATCCTTGCTATCTTGTGACACAACCCAGGATGGTGGAAACCTCATGGACTTTTGGAGCTTTGGTGACATTCCTTCCATGGCTGGCGGAGTTTTCTGA 1083 0.4838 MCGGAIISDFIPAAVTARSRRLTAGYLWPDLKKRASEVIHSDEDFEADFRDFKDDSDIEIDSEADHRVKPFAFSASSRPWAVKSVALKGGAEKSAKRKRKNQYRGIRQRPWGKWAAEIRDPSKGVRVWLGTFNTAEEAARAYDAEARRIRGKKAKVNFPEEASVKRSKVNLLGNQKTVQPNVHKFNADNNQKDLCCPMDLVEQKPLVNQFANMGSFPGSGNGLRSLPSSDDVTLYFSSDQGSNSFDYADLGWSEQAPQTPEISSMLSAPLDCDSHFVQDANHQTNSQDVVSMQDDLSKTLSEELVDIESELKFFQMPYLEGSWDDASLESLLSCDTTQDGGNLMDFWSFGDIPSMAGGVF* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00018 360 ProSiteProfiles AP2/ERF domain profile. 102 159 IPR001471 GO:0003700|GO:0006355
Lapu9g00018 360 Gene3D AP2/ERF domain 101 161 IPR036955 GO:0003700|GO:0006355
Lapu9g00018 360 CDD AP2 102 160 IPR001471 GO:0003700|GO:0006355
Lapu9g00018 360 PANTHER DNA-BINDING DOMAIN 77 273 IPR044808 GO:0003700|GO:0009873
Lapu9g00018 360 SMART rav1_2 102 165 IPR001471 GO:0003700|GO:0006355
Lapu9g00018 360 PRINTS Ethylene responsive element binding protein signature 103 114 IPR001471 GO:0003700|GO:0006355
Lapu9g00018 360 PRINTS Ethylene responsive element binding protein signature 125 141 IPR001471 GO:0003700|GO:0006355
Lapu9g00018 360 Pfam AP2 domain 102 151 IPR001471 GO:0003700|GO:0006355
Lapu9g00018 360 SUPERFAMILY DNA-binding domain 102 160 IPR016177 GO:0003677
Lapu9g00018 360 FunFam Ethylene-responsive transcription factor 2 101 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00018 Lapu-Chr9 192559 195242 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g00018 1 360 AP2-EREBP Transcription Factor Family AT1G53910 46.633 2.02e-70 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lapu9g00018 AP2 1.8e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00018 K09286 - gmx:100170723 508.834