Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g02007 ATGAAAGTAATGAACTTTTGTAGTAGCATAACAAAACCCAATTTTTTGATTGGCCAATCGGAAATGCCTATTCTAACATTTGGTCACTGTAAGCTGAGTGCTACCTTAGCTCTTCGGTTACCTCGTGATTGCATTAGGAGGGTGGAGTTGATTACGAAAGTTCAGTGTTCTGTAGCTGATAGAACATTTAGTTCAGGTTCGGTGTATTCGCCGGCGTCCGAAGCGGACTCCGGTCGAATGAATCGTAGGCGGGGAGGTTCCTCATCGATATACAGCCGTCCTAGTTTATCAGAAATGAAGAAAGAGAAGGCTGCGACAAGGGAGAAGGTTTATGAGTTCTTGAAGACACTTGGTATTGTTCCTGATGAGCTTGATGGTCTTGAACTTCCTGTGACTGTTGATGTTATGAGGGAGCGCATAGATTTTCTTCATAGTTTGGGGCTTACAATTGAAGACATAAACAATTATCCACTTGTTCTTGGCTGCAGCGTCAAGAAGAACATGATTCCTGTGCTCGACTATCTTGGTAAATTGGGAGTGAGGCAATCCTCTATTACGTGGTTCTTGCAGAGATACCCACAAGTTCTTCATGCTAGTGTTGTTGTGGATCTTATGCCGGTGGTAAATTATCTTAAGGGGATGGATATCAAGTCTGAGGATATTCCTCGTGTTCTTGAGAGGTACCCTGAAGTGCTTGGCTTCAAACTTGAGGGAACCATGAGCACATCAGTTGCTTATTTGATTGGAATTGGTGTAGGAAGAAGAGAAATTGGAGGTGTCTTAACTAAATATCCAGAGATTTTGGGGATGCGAGTTGGTAGAATCATCAAGCCTTTTGTGGAGTATCTGGAAAGTTTGGGGATTCCAAGGTTAGCCATTGCTAGACTGATAGAGCAACGACCTTATATTCTTGGATTTGGGCTGGGTGAGAAGGTGAAACCAAATGTTAAATCCCTTGAAGAGTTTAATGTTAGGCGAACATCACTTCCATCTATAATTGCTCAGTATCCTGACATCATTGGAACTGACTTAAATTCGAAGCTTGTCAATCAGAGAAGTATACTTAGTTCGGTACTTGATTTGGATCCAGAGGACTTTGGCCGAGTTGTTGAGAAGATGCCACAGGTAGTTAGCCTCATAAGGGGACCTATGCTGAAGCATGTTGATTTTCTTAAGGATTGTGGGTTTTCATTGCCACAAATGAGGAAGATGGTTGTTGCATGCCCTCAATTACTCGCTTTAAACATTGACATTATGAAACTTAGCTTTGATTACTTCCAAATGGAGATGAAAAGGCCTTTGGAAGAGTTGGTTACTTTCCCTGCATTCTTCACATATGGTTTGGAGTCAACTATAAAGCCTAGGCATATGATGATCGTCAAGAAAGGGTTAAAGTGTTCTTTGTCATGGATGCTTAATTGTTCTAATGAGAAATTTAAGCAACGAATGGACTATGACACTATTGACATGGAAGAGATGGAAATGGAATCATCATTTGACATGGATTCACTAACTCAACCAAGGAGTGATGATGAATCAGATTTTGACTATGAAGACAGTGATGAAGATAATGAGTAG 1578 0.4106 MKVMNFCSSITKPNFLIGQSEMPILTFGHCKLSATLALRLPRDCIRRVELITKVQCSVADRTFSSGSVYSPASEADSGRMNRRRGGSSSIYSRPSLSEMKKEKAATREKVYEFLKTLGIVPDELDGLELPVTVDVMRERIDFLHSLGLTIEDINNYPLVLGCSVKKNMIPVLDYLGKLGVRQSSITWFLQRYPQVLHASVVVDLMPVVNYLKGMDIKSEDIPRVLERYPEVLGFKLEGTMSTSVAYLIGIGVGRREIGGVLTKYPEILGMRVGRIIKPFVEYLESLGIPRLAIARLIEQRPYILGFGLGEKVKPNVKSLEEFNVRRTSLPSIIAQYPDIIGTDLNSKLVNQRSILSSVLDLDPEDFGRVVEKMPQVVSLIRGPMLKHVDFLKDCGFSLPQMRKMVVACPQLLALNIDIMKLSFDYFQMEMKRPLEELVTFPAFFTYGLESTIKPRHMMIVKKGLKCSLSWMLNCSNEKFKQRMDYDTIDMEEMEMESSFDMDSLTQPRSDDESDFDYEDSDEDNE* 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g02007 525 SMART mt_12 87 120 IPR003690 GO:0003690|GO:0006355
Lapu8g02007 525 SMART mt_12 367 397 IPR003690 GO:0003690|GO:0006355
Lapu8g02007 525 SMART mt_12 186 217 IPR003690 GO:0003690|GO:0006355
Lapu8g02007 525 SMART mt_12 330 362 IPR003690 GO:0003690|GO:0006355
Lapu8g02007 525 SMART mt_12 434 465 IPR003690 GO:0003690|GO:0006355
Lapu8g02007 525 SMART mt_12 402 433 IPR003690 GO:0003690|GO:0006355
Lapu8g02007 525 SMART mt_12 294 325 IPR003690 GO:0003690|GO:0006355
Lapu8g02007 525 SMART mt_12 258 289 IPR003690 GO:0003690|GO:0006355
Lapu8g02007 525 SMART mt_12 222 253 IPR003690 GO:0003690|GO:0006355
Lapu8g02007 525 SMART mt_12 150 181 IPR003690 GO:0003690|GO:0006355
Lapu8g02007 525 MobiDBLite consensus disorder prediction 65 95 - -
Lapu8g02007 525 Pfam mTERF 172 480 IPR003690 GO:0003690|GO:0006355
Lapu8g02007 525 FunFam Transcription termination factor MTERF4, chloroplastic 274 488 - -
Lapu8g02007 525 FunFam Transcription termination factor mterf4, chloroplastic 136 273 - -
Lapu8g02007 525 Gene3D Transcription termination factor 3, mitochondrial 277 488 IPR038538 -
Lapu8g02007 525 Gene3D Transcription termination factor 3, mitochondrial 151 276 IPR038538 -
Lapu8g02007 525 PANTHER CGI-12 PROTEIN-RELATED 171 482 IPR003690 GO:0003690|GO:0006355
Lapu8g02007 525 MobiDBLite consensus disorder prediction 496 525 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g02007 Lapu-Chr8 37761887 37764726 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Lapu8g02007 mTERF 8e-106 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g02007 K15032 - gmx:100785223 822.772