Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g02001 ATGGGGGAGGGAGAGAACATAGAAGTAGAAACAGAAGCAGAATCCGAAACATCATCCTCATGGAACCTCGGGAAACACACTCAGATAATCGAGCTGTCGGAGAAGCTGTCGAACGGGAACCTCGGCGCCAAGATTGAGGCTGCGAGGGAGATAAGGAAGATGGTTCGGAAATCATCGTCCTCTTCGAAGACACGTGCGAAACTCGCCGCCGCGGGTGTGATTGAACCGCTCGTGCTGATGCTGTCTTCTTCCAACATCGACGCTCGCCAATCCTCTCTTCTGGCTCTCCTCAACCTCGCTGTTCGCAATGAACGAAAGGGACAAGTGGGGACCAAAAACCTGTGCAGCACTGTGGGAGGAAAAACAAAGCATAAAAATCTCTATGGGTATGGGGGGAATACGGCCAAACTTCCAACTGGAAGTGGCAGAGTGGGGGACCATCTTTTGGAATCGTGGGAAGGAAAGATTCTTCAATTTCCCTCCAATCTTGTAAAAAACAAGGTCAAAATAGTGACAGATGGTGCCATGCCTCCACTGGTGGAGCTCCTCAAGATGAAAAATAGCAGTATACGAGAATTAGCTACGGCTGCAGTCTTGACGCTCTCAGCTGCTGCATCCAACAAACCCATTATTGCTGCTTCTGGAGCAGCACCTTTCCTTGTTCAGATTCTCAAATCTGGAAGTGTTCAAGGCAAAGTTGATGCTGTTACAGCCCTGCATAATCTTTCTACCTGCAATGAGAATTCCGTTGAACTTCTTGATCCAAGTGCTGTTTTCCCTCTGATCAACCTTCTTAAAGAGTGCAAGAAGTATTCCAAGTTTGCAGAAAAAGCCACAGCACTGCTTGAAATCCTTTCCAACTCTGAAGAAGGGCGAACCGCAATCTCAATTGCAGATGGTGGAATCTTAACGCTAGTTGAGACAGTTGAAGATGGATCACTTGTCAGCACAGAACATGCGGTAGGAACTCTGCTATCTTTATGCCGAAGCTGCCGAGATAAATACCGTGAACTGATTCTTAAAGAAGGAGCGATTCCGGGTCTGTTACGACTGACTGTCGAGGGCACGGCTGAAGCACAAGATAGAGCTCGTGTGCTTCTGGATTTGCTCAGAGATTCTCCCCCAGAAAAGAGACTAACCTCATCAGTTCTGGAGAAAATTGTTTATGACATTGCTGAACGGGTAGATGGAGCAGATAAAGCTGCTGAAACTGCCAAACAGTTATTGCAAGATATGGTTCAAAGGAGTATGGAACACAGCATGAAATGCATCCAGCACAGGGCTGCATCTTGCACTCCTTCTATTCAATCCTCTTGA 1317 0.4723 MGEGENIEVETEAESETSSSWNLGKHTQIIELSEKLSNGNLGAKIEAAREIRKMVRKSSSSSKTRAKLAAAGVIEPLVLMLSSSNIDARQSSLLALLNLAVRNERKGQVGTKNLCSTVGGKTKHKNLYGYGGNTAKLPTGSGRVGDHLLESWEGKILQFPSNLVKNKVKIVTDGAMPPLVELLKMKNSSIRELATAAVLTLSAAASNKPIIAASGAAPFLVQILKSGSVQGKVDAVTALHNLSTCNENSVELLDPSAVFPLINLLKECKKYSKFAEKATALLEILSNSEEGRTAISIADGGILTLVETVEDGSLVSTEHAVGTLLSLCRSCRDKYRELILKEGAIPGLLRLTVEGTAEAQDRARVLLDLLRDSPPEKRLTSSVLEKIVYDIAERVDGADKAAETAKQLLQDMVQRSMEHSMKCIQHRAASCTPSIQSS* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g02001 438 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 256 300 IPR000225 GO:0005515
Lapu8g02001 438 MobiDBLite consensus disorder prediction 1 20 - -
Lapu8g02001 438 Gene3D - 29 116 IPR011989 -
Lapu8g02001 438 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 215 257 IPR000225 GO:0005515
Lapu8g02001 438 SMART arm_5 61 101 IPR000225 GO:0005515
Lapu8g02001 438 SMART arm_5 204 244 IPR000225 GO:0005515
Lapu8g02001 438 SMART arm_5 163 203 IPR000225 GO:0005515
Lapu8g02001 438 SMART arm_5 245 287 IPR000225 GO:0005515
Lapu8g02001 438 SMART arm_5 288 329 IPR000225 GO:0005515
Lapu8g02001 438 SUPERFAMILY ARM repeat 32 395 IPR016024 -
Lapu8g02001 438 Gene3D - 154 275 IPR011989 -
Lapu8g02001 438 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 174 216 IPR000225 GO:0005515
Lapu8g02001 438 PANTHER U BOX DOMAIN-CONTAINING 28 372 - -
Lapu8g02001 438 Gene3D - 276 423 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g02001 Lapu-Chr8 37665534 37671099 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g02001 166 372 U-box Gene Family AT3G54790 40.385 2.48e-28 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g02001 K08332 - fve:101312745 499.204