Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g01997 ATGGGTTACTTATGTGATTTTTGTGGAGACCAGAGGTCATTGGTGTACTGCCGTAGTGATGCTGCATGCTTATGTTTGTCGTGTGATCGAAATGTTCATTCTGCTAATGCCCTATCTAGGCGTCATTCGAGAACCCTTCTATGTGAGAGATGCAATTCACAACCTGCTTTTGTGAGGTGTGTTGAAGAGAAAATTTCACTTTGTCAGAACTGTGATTGGTTGGCTCATGGTACCTCACCTACTTCTTCGACACACAAGAGACAAACAATCAATTGCTACTCTGGCTGCCCTTCAGCTGCAGAATTTTCTTCAATATGGTCCTTTTTCTTAGATATCCCTTCTATGGGTGAAGCATGTGAGCAGGAACTGGGTTTGATGAGCATTAATGAGAATGACAACAAGAGTGACTGGGTTCCTCCAGAAGGGCAGAATGGGTCTGGTTCAGCTCAAGTGACAGATCTACCCACCAAGGGTAAATTTTGGGCCAGCACATCTTCAATACCAGAGTCAGGCTCAGAACCTCGTATTCTGGACCAGCCACCTGGACCTGGCAATGAATGTATGCCCAAGTTGTACTGTCCTGGAAAAAAAGTTTCCAGTATATGTGAAGAGGATAATCTATATGATGATTTCATCATGGATGAAGTGGATCTAGAACTTGAGAACTACGAGGAGCTTTTTGGGATGGCTCTCAGTCATTCTGAAGAGCTCTTTGAAAATGGTGGAATTGATAGCTTATTTGAGACAAAGGATATGTCTGCTAGTGAATCCCATTGTCAGGGTGCTGTTGCTGCTGAGGGATCGTCTGCTGGATTGGTCAATGTTATCCAACCAGCATGCAGCAATGCAGCATCTGCAGATTCCATGTTGAGTACAAAAACTGAACCAATTGTTTGTTTTACGGGAAGGCAATCTCAATCAAACATTTCTTTTTCTGGTGTTACCAAAGATAGTACTGGTGACTATCAGGACTGTGATGCTTCTTCAATGCTTCTCATGGGAGAGCCTCCCTGGTGTCCTCCTTGCACTGAGAGTTCTCTGCATTCTGCCAACCGTAGCAATGCTGTCATGCGCTATAAGGAAAAGAAGAAAACCCGGAAGTTCGAGAAGAAAGTAAGGTATGCCTCTCGCAAGGCTAGGGCTGATGTGAGAAGGCGTGTGAAGGGCCGATTTGTTAAAGCTGGCTTAATATTTTGTCCCTCTCTCTTTGCCATGTATTGTGCAGAATATACATATGTGCAGCTAGAGGTGTAA 1254 0.441 MGYLCDFCGDQRSLVYCRSDAACLCLSCDRNVHSANALSRRHSRTLLCERCNSQPAFVRCVEEKISLCQNCDWLAHGTSPTSSTHKRQTINCYSGCPSAAEFSSIWSFFLDIPSMGEACEQELGLMSINENDNKSDWVPPEGQNGSGSAQVTDLPTKGKFWASTSSIPESGSEPRILDQPPGPGNECMPKLYCPGKKVSSICEEDNLYDDFIMDEVDLELENYEELFGMALSHSEELFENGGIDSLFETKDMSASESHCQGAVAAEGSSAGLVNVIQPACSNAASADSMLSTKTEPIVCFTGRQSQSNISFSGVTKDSTGDYQDCDASSMLLMGEPPWCPPCTESSLHSANRSNAVMRYKEKKKTRKFEKKVRYASRKARADVRRRVKGRFVKAGLIFCPSLFAMYCAEYTYVQLEV* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g01997 417 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 395 - -
Lapu8g01997 417 SMART bboxneu5 4 47 IPR000315 GO:0008270
Lapu8g01997 417 SMART bboxneu5 48 90 IPR000315 GO:0008270
Lapu8g01997 417 MobiDBLite consensus disorder prediction 132 151 - -
Lapu8g01997 417 Pfam CCT motif 352 394 IPR010402 GO:0005515
Lapu8g01997 417 ProSiteProfiles Zinc finger B-box type profile. 43 90 IPR000315 GO:0008270
Lapu8g01997 417 CDD Bbox1_BBX-like 47 90 - -
Lapu8g01997 417 ProSiteProfiles CCT domain profile. 352 394 IPR010402 GO:0005515
Lapu8g01997 417 CDD Bbox1_BBX-like 4 47 - -
Lapu8g01997 417 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g01997 Lapu-Chr8 37610653 37617010 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g01997 1 398 C2C2-CO-like Transcription Factor Family AT5G48250 54.768 6.52e-139 400
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Lapu8g01997 CCT 2.5e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g01997 - - gmx:100783016 730.324