Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g01975 ATGGATATCATATTAAGAGGAGAAACTCATGGTGCTAGTGGTTTTCAAATTTATGGCTGTGATGTAAAAAATCCTGCTTTGACTTCCACAGGCACAGATCAGTTCTTGCGTTGCCACTTTCTCCATCAACCACAGCAGACAAGGAACAATGATGCATATGCTTTTTCTGAGGATGCTTTTAAGTGGACAAACATCAACCACAATCTTATGCAAGCTTCATGTAAGAATGCAAAAGTGGTGGGAAGGAAAAGGAAGAAACAATCTTCTGTGTCTTGGATCAAAGGACAGTGGAATAAAGACGAGGACAGAAAACTAATAAGGTTGGTGAAACAACACGGTGATAAGAAATGGGCTGAAATAGCTGAGAAGTTGGAGGGAAGAGTTGGCAAGCAATGTCGTGAAAGATGGAACAATCATTTACGTCCTGATATTAAGAAAGATAGTTGGACTGAAGAAGAAGAGAGAGTGTTAGTAGACATGCATGCGAGGCTTGGAAATCGTTGGTGCGAGATGGCGAAATGCCTTCCAGGAAGATCAGAGAATGCCATAAAGAACCACTGGAATGCCACCAAAAGGAGACAGAATTCAAAGAGAAAGCACAAGAAAACAAAGAGCTCTAATGGAAAACCACATTCCTCCATACTTGAAGACTACATCAGAAGCAAGACTCCGATCAGCACAAACCCTACACCAGTCATCGACACTGCCCCAACACCCTCACAGAACACTGCAGCTAACCCTTTAAACCATGTGCTCTGTGAACCTTTTGGTAACGAATTACTCTTCCTGCAACAATTTTTCACTGAGAATGCTGAATCCTCTAAGCACTCTAAGATGTCTCCAGCCTCATATTTGGATTACTGTAACATGAATGTTGATAATGTGGATGAGAGTGAACTTGTGTATTCTCTCCAATACCCAGACAATATGCACTTGAATGATAGTCTCTTCCCTAGAGAGACTCATCTCCCAGCTAATTACCTTCCTTCGGATCTATATGTCTCTCCCTTGTTCAATGTAGCACCTGGATATGGGAATCAGAATCTGAACATAGATTTTCGGTATCAAGGTTGCTCACAAGTAAAAGGAGAGGAGGGTTTGGTAGAGTTTATTTCTTCTTAG 1122 0.4144 MDIILRGETHGASGFQIYGCDVKNPALTSTGTDQFLRCHFLHQPQQTRNNDAYAFSEDAFKWTNINHNLMQASCKNAKVVGRKRKKQSSVSWIKGQWNKDEDRKLIRLVKQHGDKKWAEIAEKLEGRVGKQCRERWNNHLRPDIKKDSWTEEEERVLVDMHARLGNRWCEMAKCLPGRSENAIKNHWNATKRRQNSKRKHKKTKSSNGKPHSSILEDYIRSKTPISTNPTPVIDTAPTPSQNTAANPLNHVLCEPFGNELLFLQQFFTENAESSKHSKMSPASYLDYCNMNVDNVDESELVYSLQYPDNMHLNDSLFPRETHLPANYLPSDLYVSPLFNVAPGYGNQNLNIDFRYQGCSQVKGEEGLVEFISS* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g01975 373 PANTHER MYB PROTEIN-RELATED 87 208 - -
Lapu8g01975 373 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 94 144 IPR017930 -
Lapu8g01975 373 SUPERFAMILY Homeodomain-like 91 187 IPR009057 -
Lapu8g01975 373 Gene3D - 147 214 - -
Lapu8g01975 373 ProSiteProfiles Myb-like domain profile. 141 191 IPR001005 -
Lapu8g01975 373 MobiDBLite consensus disorder prediction 190 207 - -
Lapu8g01975 373 FunFam Transcriptional activator Myb isoform A 93 146 - -
Lapu8g01975 373 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 145 195 IPR017930 -
Lapu8g01975 373 Pfam Myb-like DNA-binding domain 97 154 - -
Lapu8g01975 373 MobiDBLite consensus disorder prediction 187 215 - -
Lapu8g01975 373 CDD SANT 148 191 IPR001005 -
Lapu8g01975 373 Gene3D - 93 145 - -
Lapu8g01975 373 ProSiteProfiles Myb-like domain profile. 94 140 IPR001005 -
Lapu8g01975 373 SMART sant 145 193 IPR001005 -
Lapu8g01975 373 SMART sant 93 142 IPR001005 -
Lapu8g01975 373 CDD SANT 97 140 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g01975 Lapu-Chr8 37370821 37375004 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g01975 85 339 MYB Transcription Factor Family AT5G58850 44.718 2.02e-68 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lapu8g01975 Myb_DNA-bind_6 1.3e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g01975 K09422 - gmx:102668713 483.411