Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g01960 ATGTGCGGTGTTTCCGAGGGGAAACCTTCTCAAATTGGTTTAGTCATGGAGGATAAGTGTGGAAAGGAAGGGATGCATCATAGAATTTCTGCTTTGCTTGAGTTTTCTGCTGCGGATGATCTAATTGGCTTCAAAGACGCGGTGGAAAAGGAGGGTCATGATGTTGATGGGTTGGGGTTGTGGTATGTAAGGCGAGCCGGGTCAAAGAAAATATGTTATGAAGAGAGGACTCCTCTCATGGTTGCTTCAATGTTTGGAAGCCTTGATGTGTTAGCTTATATCGTTGGAACGGGTCGTGTTGATGTTAACCGTGCCAGTGGCTCAGATGGGGCTACTGCTCTTCATTGTGCTGTTGCTGGGGGTTCTGCTGCTTCTGTTGAGGTTGTCAAGCTTTTGCTTGATGCATCTGCTGATGTTGGTGCTGTTGATGCTGATGGTAACCGGCCAATTGACTTGATTGTCTCTGTGGCTAATTCTCTCTTCAGTCCAAGGGCCAGGCTGCTACAGGCCCTCCTGGAGGGTACCTGTGATGCTGATCAGGCATGTTTCTCGCTTCCAGAAGTGATTGACCAGGTTGAGGAACAAAGGCAAGAAATGAGCACACCTCGTGTTTCAAAAGATTATCCCATTGATCTCTCTCTTCCAGACATAAAGAATGGGATATATGGCACTGATGAGTTTAGGATGTACACATTCAAAGTGAAGCCTTGTTCCAGGGCGTATTCTCATGACTGGACCGAGTGCCCCTTTGTTCACCCTGGTGAGAATGCAAGGCGGCGTGATCCGAGGAAGTACCATTACAGCTGTGTCCCTTGTCCTGAGTTTAGGAAGGGATCCTGCAGCAAAGGGGATGCCTGTGAGTATGCTCATGGTATTTTTGAGTGCTGGCTTCACCCTGCCCAGTACCGGACGCGGCTCTGCAAGGATGAGAGTGGATGTACAAGGAGAGTTTGCTTCTTTGCACACAAGCCGGAGGAGCTTCGGCCCTTGTATGCTTCTACTGGTTCTGCTATTCCTTCTCCAAGGTCCTATTCTGCTAGTGCTTCTGCATTGGAGATGGGTTCAGTTAGCCCAATTGCACTTGGTTCTCCATCTGTCTTGATACCACCTGCCTCAACACCCCCTTTGACTCCATCTGGAGCATCTTCTCCGATTACTGGTTCCATTTGGTCTCAATCTAATGTTTCAGTCCCCACCCTGCATTTGCCCAAAAGTAGATTGAAGACTGCATCAACTGCAAGAGACATTGAATTAGATTTTGAACTGCTTGGACTTGAAACTCATCGCCGTAGACAACAGCTAATGATGGATGAGATGTCTGGTCTTTCCTCTCCTTCCAACTGGAAAAATTCCATGCCTAATAGTCCATCTTTTCATGTTTCTTTGAGTGATCACATTGGGGAGTTAAATAGGCTTTCAGGGGTGAACCCTTCTAGCCTTGAAGATACTTTTGGATCTCTTGAACCATCAATTTTAGCTAAATTCCATGGACTCTCACTTGATGTTGCAGGACCTCAGTTACAATCTCCAACTGGAATCCAGATGCGTTCGAATATGAACCAGCAGCTGGGAGGCTATTCATCCGGCCTTTCCGCCTCAAACATGGTTGGCTCGAGATCCTTCAGGGTTGATCCATCTGGTGAAGGAGCCTCAGTGGCTCTCAATCCAAGAGCTGCTGCCTTTGCAAAGCGTAGCCACAGCTTTATCGAGCGAAGCATGGTGAACCATCCTTCCGAGCTTCCTTCCCCAAAGCCCCATCCCTTCTCTAACTGGGGCTCACCTGATGGAAAACTGGATTGGGCCATAAATGGAGATGAGCTGAATAAGCTGAGGAAATCTGCTTCCTTTGGATTTCGAAGCAGCAACACTCCTCTTACACAGGCTTCAACCAAAATGCCAGCAAATGTTGATGATGAGCCAGACGTGTCTTGGGTTAACTCACTTGTTAAGGATGCTCCACCAGAATCTGGTGTGGAAGATCAGCGAAAACAATGTCATAATGGAACAGAAGCAATTCCAGCGTGGTTGGAGCAAATGTACTTGGATCAGGAGCAAATGGTGGCGTGA 2067 0.4761 MCGVSEGKPSQIGLVMEDKCGKEGMHHRISALLEFSAADDLIGFKDAVEKEGHDVDGLGLWYVRRAGSKKICYEERTPLMVASMFGSLDVLAYIVGTGRVDVNRASGSDGATALHCAVAGGSAASVEVVKLLLDASADVGAVDADGNRPIDLIVSVANSLFSPRARLLQALLEGTCDADQACFSLPEVIDQVEEQRQEMSTPRVSKDYPIDLSLPDIKNGIYGTDEFRMYTFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPEFRKGSCSKGDACEYAHGIFECWLHPAQYRTRLCKDESGCTRRVCFFAHKPEELRPLYASTGSAIPSPRSYSASASALEMGSVSPIALGSPSVLIPPASTPPLTPSGASSPITGSIWSQSNVSVPTLHLPKSRLKTASTARDIELDFELLGLETHRRRQQLMMDEMSGLSSPSNWKNSMPNSPSFHVSLSDHIGELNRLSGVNPSSLEDTFGSLEPSILAKFHGLSLDVAGPQLQSPTGIQMRSNMNQQLGGYSSGLSASNMVGSRSFRVDPSGEGASVALNPRAAAFAKRSHSFIERSMVNHPSELPSPKPHPFSNWGSPDGKLDWAINGDELNKLRKSASFGFRSSNTPLTQASTKMPANVDDEPDVSWVNSLVKDAPPESGVEDQRKQCHNGTEAIPAWLEQMYLDQEQMVA* 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g01960 688 Gene3D - 267 329 - -
Lapu8g01960 688 PANTHER UNKEMPT FAMILY MEMBER 34 652 IPR045234 -
Lapu8g01960 688 SUPERFAMILY Ankyrin repeat 72 157 IPR036770 -
Lapu8g01960 688 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 271 291 IPR000571 GO:0046872
Lapu8g01960 688 SMART ANK_2a 74 104 IPR002110 GO:0005515
Lapu8g01960 688 SMART ANK_2a 109 141 IPR002110 GO:0005515
Lapu8g01960 688 ProSiteProfiles Ankyrin repeat profile. 109 144 IPR002110 GO:0005515
Lapu8g01960 688 ProSiteProfiles Ankyrin repeat region circular profile. 109 143 - -
Lapu8g01960 688 FunFam Zinc finger CCCH domain-containing protein 66 224 292 - -
Lapu8g01960 688 Pfam Ankyrin repeats (3 copies) 69 141 IPR002110 GO:0005515
Lapu8g01960 688 SMART c3hfinal6 266 292 IPR000571 GO:0046872
Lapu8g01960 688 SMART c3hfinal6 301 324 IPR000571 GO:0046872
Lapu8g01960 688 ProSiteProfiles Zinc finger C3H1-type profile. 271 293 IPR000571 GO:0046872
Lapu8g01960 688 Gene3D - 30 170 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g01960 Lapu-Chr8 37162334 37165499 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g01960 27 683 C2H2 Transcription Factor Family AT5G12850 39.232 4.73e-147 442
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lapu8g01960 Ank_2 2.7e-07 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g01960 - - gmx:100795085 1185.63