Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g01952 ATGGAGGAGAGGAGCGTGCTCTTCCCAGATTTGGGTGATGAAATGAAGGTAGGAATTCATCAATTAAGGATAACTCAGGATTGGGATGAAGCTACTGAGAATTGGGAGCCACGAGGGAAGTGGGTGTTCCTTGAAGTAGTTCAGGAGTGTGAAAAGGAATCCTTTATTGCGGTTTCAGTGAAGCAAATATGGTATGATATAAGGACTAGAAAAGATTTTGACAATATAAAACATTGGACTTGTAATGATAAGGACTTGTGGAGAGTCCTTGTAGTGGAGGTGGTTGGTGACTACTATGTTCTCACACTAGAAGAAGTTTTCCCAACTTTGAACCTTCCGGAGGATTTCTTGAAAGAAACACCAGAACTGAACTCAGTTGAACCTATTAACAACATTCATTGTGATGCTGCTCACACTAATGTATTTGGTTCTGACATTGGAGTTTATGATAGCCCTATGGAAAATGGTGGTGTGTCAAACTTGTTGGATACCAACAAAAAAAGTGGTAGCATCATATGCTTTCAAGAAGAATACGATAGAGATCCTTTGATGGATGGGGCATCAGAGAAGAAAATTATTTTGCAAGAGGAACATGTATCTCCTGTTCAGGAGATCATGCCTGATGGTGATGAAGTAAAGCCAGGTGGTAGCTGTTGTTCAAAGAAGAGAAAACGTAGACGCTCAGTGTCTATTTGTTGGAAACCTCTGGTAGTGACCAATGTTGAATTGTGTCCTGATATTATTGACCAGTATTTACTTGGATGTGGTAGCAAGACCATTAGGGAACTTTTGAAGACTAAAGTATGGAAGCATCTAGCATATCTTGGATGGAAAATTGAGTGGACAGAAGATAGAAATTTTCCTGGACGTGGACGCTACAGGTACAAGTCACCTGATGAACAGGACGAGAAGTTTTACACTTCAATTATTCAAGTTTTGACACATATGCAATTGGAATCCAACATGAAGACTATGCAGCCCCAAGTTGATCACAGTAGGATGCATTCTGCAAATGACTCTAATCTTTCACATCTGCTTTCAGACCAACCCCCAAATGACCAGGATCTAGATGTTTGTCCTCCAAATAAGGGAAGCGATGGGCATGTTGCTGGCGATGATCTATCGCAAACCTTGTCCCAATTTTTTCAAAAAGAGCCTGAATTGCATACTGCTTCGCCAGCTAGTATCTCAACTGAGAATAGAAACTATAAACACACCAGGAATTCGAAGGCCATCATGCCAAAGTGCCACATGAAAGGGTCACGTACAGAATGTCTAAGATCGAGCAAAAGGGTGCAAAAGGTGTCTGCCTCAAGTCTGTCACACCAACAACCTCAAAATGTTCTTTATTGGTTAATAGATAAGGACGTGCTGATGCCAAGATGTAAGGTCCATTACTGGGCAGAAGGAGGCAGTAACACTGATGTAGCTCAGGGGAGGATAACTTACGATGGGATTAGGTGTAGCTGTTGTCAGAAAATATATGGTCTTCGGGGCTTTGTAAATCATGCTGGAGGAAATGGTGACTGCAGGCCTTCTGCTAGCATATTTTTGAGGGATGGTAGGTCACTCTTAGATTGCATGATAAAAGTAATGCACGATAATAGAACAAGGGAAGATATGAACAGACCACGCAATCATCTGTTTGAAGGAGAAAATGACGATATTTGTTCTGTCTGTCAATATGGCGGAGAACTAATTTTATGCGACCAATGTCCATCCGCATTTCATAGGACATGTCTTGGTTTGAAGGATATCCCTCATGGTGACTGGTTTTGCCCTTCATGTTGTTGTGCGATTTGCAGCCAAATCAAAACAGAAGGGACTGAGGATGTACTTTTTCTTACTTGCATTCAATGTGAACATAAATATCACGTCGGATGCTTGAAAAATAGAGAAAAAGATGAGTCAAGAAGATATATGGAAAATTGGTTGTGTGGAAAAGAGTGTGAACAGATATATGCAGGCCTCCAAAGCCTATTAGGAAAGCCACTTACAGTGGGTCCGAACAATCTAACTTGGACCTTGGAGAAGTTTAACAACTCTGAGAGTCCTGATGTTGGCAGTTCTCAGAATTACTTATTGGCAGAGAAATACAGCAAACTCAGTGTTGCACTTTCGGTGATGCATGAGTGTTTTGATCCCCTGAAGAACCCTTTGACTGGTAGAGATATCATTGATGATGTTATGTTCAACTCAAGGTCAGAGCTCAATCGATTGAATTTCCAGGGTTTCTACACTGTACTTCTGGAACAAAATGAAGAATTGATTAGTGTAGCAACTATTAGAGTGTTTGGACAGAAAGTAGCTGAGGTACCGCTTGTAGGTACCAGAATACAATATCGTCGACTTGGAATGTGTCGCATTTTAATGAATGAGCTTGAGAAGAACCTCATGCAACTGGGAGTGGAGAGGCTAGTCTTGCCTGCTGTTCCTGCTGTGCTAGAAACTTGGACCAAATGTTTTGGCTTTGCACAGATGACAAATTTTGATAGGTCACAGTTCTTGGACTGTGCTTTCCTAGACTTTCAGGAAACCGTCATGTGCCAGAAGCTGTTGACAAGGAGTCCATCTCCCCAGTCAGGTTTAACAAGAGACACACAACGAAAACCACATGATGTTTTGACTCTTAAATGTAGAATTGAGTTTGACAAGTCCAGTTCAGCATCAGAAGTAGACCAACATGAAGAGATAGAGAAAAGTAGGATGGATCAACAAGGGATGGAGTGTGTCTCTACTCTGCCAACTTCCTAA 2754 0.4139 MEERSVLFPDLGDEMKVGIHQLRITQDWDEATENWEPRGKWVFLEVVQECEKESFIAVSVKQIWYDIRTRKDFDNIKHWTCNDKDLWRVLVVEVVGDYYVLTLEEVFPTLNLPEDFLKETPELNSVEPINNIHCDAAHTNVFGSDIGVYDSPMENGGVSNLLDTNKKSGSIICFQEEYDRDPLMDGASEKKIILQEEHVSPVQEIMPDGDEVKPGGSCCSKKRKRRRSVSICWKPLVVTNVELCPDIIDQYLLGCGSKTIRELLKTKVWKHLAYLGWKIEWTEDRNFPGRGRYRYKSPDEQDEKFYTSIIQVLTHMQLESNMKTMQPQVDHSRMHSANDSNLSHLLSDQPPNDQDLDVCPPNKGSDGHVAGDDLSQTLSQFFQKEPELHTASPASISTENRNYKHTRNSKAIMPKCHMKGSRTECLRSSKRVQKVSASSLSHQQPQNVLYWLIDKDVLMPRCKVHYWAEGGSNTDVAQGRITYDGIRCSCCQKIYGLRGFVNHAGGNGDCRPSASIFLRDGRSLLDCMIKVMHDNRTREDMNRPRNHLFEGENDDICSVCQYGGELILCDQCPSAFHRTCLGLKDIPHGDWFCPSCCCAICSQIKTEGTEDVLFLTCIQCEHKYHVGCLKNREKDESRRYMENWLCGKECEQIYAGLQSLLGKPLTVGPNNLTWTLEKFNNSESPDVGSSQNYLLAEKYSKLSVALSVMHECFDPLKNPLTGRDIIDDVMFNSRSELNRLNFQGFYTVLLEQNEELISVATIRVFGQKVAEVPLVGTRIQYRRLGMCRILMNELEKNLMQLGVERLVLPAVPAVLETWTKCFGFAQMTNFDRSQFLDCAFLDFQETVMCQKLLTRSPSPQSGLTRDTQRKPHDVLTLKCRIEFDKSSSASEVDQHEEIEKSRMDQQGMECVSTLPTS* 918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g01952 917 MobiDBLite consensus disorder prediction 325 350 - -
Lapu8g01952 917 MobiDBLite consensus disorder prediction 886 917 - -
Lapu8g01952 917 Gene3D - 686 855 - -
Lapu8g01952 917 ProSiteProfiles Zinc finger PHD-type profile. 554 599 IPR019787 -
Lapu8g01952 917 Pfam Tify domain binding domain 479 530 IPR032308 -
Lapu8g01952 917 CDD NAT_SF 748 808 - -
Lapu8g01952 917 Pfam PHD-finger 556 596 IPR019787 -
Lapu8g01952 917 SUPERFAMILY FYVE/PHD zinc finger 537 597 IPR011011 -
Lapu8g01952 917 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 691 853 IPR000182 GO:0016747
Lapu8g01952 917 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 545 613 IPR013083 -
Lapu8g01952 917 PANTHER PHD FINGER PROTEIN 12 257 899 IPR042163 GO:0003714|GO:0045892
Lapu8g01952 917 SMART PHD_3 556 597 IPR001965 -
Lapu8g01952 917 SMART PHD_3 598 650 IPR001965 -
Lapu8g01952 917 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 743 830 IPR016181 -
Lapu8g01952 917 MobiDBLite consensus disorder prediction 325 353 - -
Lapu8g01952 917 SMART ring_2 557 596 IPR001841 -
Lapu8g01952 917 SMART ring_2 598 653 IPR001841 -
Lapu8g01952 917 MobiDBLite consensus disorder prediction 886 904 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g01952 Lapu-Chr8 37081245 37086868 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g01952 400 796 PHD Transcription Factor Family AT5G58610 45.679 5.00e-109 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lapu8g01952 TDBD 9.1e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g01952 - - vra:106763506 1566.98