Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g01948 ATGACTTCTTGGCTTAGAGGCAAGTGCGTCGGTAAGGGCGCGTTTGGCGTTGTCAACGCGGCGGTTTCCAAAACTCATGGTCGCGTTTTCGCGGTCAAGTCCGTGGATCGTGGAGCGGGGCACCCGCGTCAGCTTGAGGCGTTGGAGAACGAGATTCGGATTCTCAAACGCGTGGCGTCGCCGCACGTCGTGGCTTATCTCGGTGACGACGTCACGTGCGAGCACGGCGGGACGGCGTCGTTTAGGAACCTTCATTTGGAGTACATGCCAGGTGGCACCGTCGCTGATCTGGACCGCGCTGACGTGGACGAGCGTTTAGTGAGGCGCTACGCGTGGTGCCTCGTGAGCGCGCTGCGTGACGTCCACGCGTCCGGCTTCGTGCACTGCGACGTCAAGGGGAGAAACGTCCTCCTCTCCAGCAACCGTGACGTCGCGAAACTCGCCGACTTCGGTGCGGCCGTGGAAGTCGAATCCTCGCCGGAGTTCTTGCCCCGCGGGAGTCCGATGTGGATGGCGCCGGAGGTGGTTCGCCGGGAGCGGCAGGGGCCGGAGTCCGACGTGTGGTCGCTCGGTTGCACGATGATCGAGATTGTCAACGGGAAACCGGCCTGGGAGGATCGCGGTGTAGACACGCTAAGTCGAATCGCGTACTCGGACGAGTTGCCGGAGTTTCCGAGCAAATTGTCAGAGCTGGGGAAAGATTTTCTCGAGAAGTGTCTGAGAAGAGAATGGAGTGAACGGTGGAGCTGCGATCAGCTGCTGCAGCATCCATTTTTGCTTCCCTACGCCGTGGTTGAATCGTCGCCTCGTTGCGTTCTGGACTGGGTTGACTCGGAGTTCGCCGAGTCAGAATACAACGACCGTGAACAGGAACGAGGGTCGTTAGAATTTAGCCGTGAGGAAAATTCAGTTAGAAATAGAATTAGTAAATTAGCAACAGTATCGAGGGTAAATTGGGAAACGCAGGGTTGGGTAGCGGTGAGGGAAGTTGAGCTCAACGAAGAATCACCGTCATCAACGACAAGAACAACAAGTGAAACAGAAGAAGGGGTAAATTGGGAATTTAGCAATGTGGTGAAAGTAGGGAGTTGTGGGGAATGTTGGCATGGAGGAGGGGTAAATCGGGAAATAGGAAAGTTTGGTGAGGAGTGTAACAGAGGTTGGAGGTGTGGGTTGGAAAGGGTGGGTAGGGTGAGGGGAATATTCAGCATTTACAGTTGTAAAAATTTGATGCGGTGTTATTTATTGTTCTTAATGTATTTAAATATATTATGGTTTTGGATTATTTATGCTGTTTACCTTTCTTTTGATGGGACAATAAATTGGGTGGATTGTAGAATAAATTGA 1347 0.5323 MTSWLRGKCVGKGAFGVVNAAVSKTHGRVFAVKSVDRGAGHPRQLEALENEIRILKRVASPHVVAYLGDDVTCEHGGTASFRNLHLEYMPGGTVADLDRADVDERLVRRYAWCLVSALRDVHASGFVHCDVKGRNVLLSSNRDVAKLADFGAAVEVESSPEFLPRGSPMWMAPEVVRRERQGPESDVWSLGCTMIEIVNGKPAWEDRGVDTLSRIAYSDELPEFPSKLSELGKDFLEKCLRREWSERWSCDQLLQHPFLLPYAVVESSPRCVLDWVDSEFAESEYNDREQERGSLEFSREENSVRNRISKLATVSRVNWETQGWVAVREVELNEESPSSTTRTTSETEEGVNWEFSNVVKVGSCGECWHGGGVNREIGKFGEECNRGWRCGLERVGRVRGIFSIYSCKNLMRCYLLFLMYLNILWFWIIYAVYLSFDGTINWVDCRIN* 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g01948 448 ProSitePatterns Serine/Threonine protein kinases active-site signature. 126 138 IPR008271 GO:0004672|GO:0006468
Lapu8g01948 448 SUPERFAMILY Protein kinase-like (PK-like) 4 300 IPR011009 -
Lapu8g01948 448 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Lapu8g01948 448 Pfam Protein kinase domain 8 259 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu8g01948 448 CDD STKc_MAPKKK 3 259 - -
Lapu8g01948 448 Gene3D Transferase(Phosphotransferase) domain 1 2 336 - -
Lapu8g01948 448 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 4 345 - -
Lapu8g01948 448 FunFam Serine threonine protein kinase putative 2 312 - -
Lapu8g01948 448 SMART serkin_6 4 259 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu8g01948 448 ProSiteProfiles Protein kinase domain profile. 4 259 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g01948 Lapu-Chr8 36998188 36999710 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g01948 4 363 MAP Kinase Kinase Kinase AT1G07150 54.076 1.23e-124 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Lapu8g01948 Pkinase 4e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g01948 - - gmx:100776227 602.823