Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g01942 ATGCCCACTCAATCCGAGTCACCCAGTAACTCACTGAGTCAACTCGCTCAGAACGTGTTCTCCGACAACAACAGCAGCATCATGCTCGCAGCCATTCTTTCCTTGCTCCTAGTCATCATCTTCGTCCTTCTACTCCACGTGTACGCCAAGTGGTTCTTATCTCAGTCGCAATTACATTCTCACACTAGCCGGTGGCGAACTCCGGTGACCGTCTCCGGCGTTCTGGAACCTTCCCATTTCCACAGCATCAACATAGAAGCGTCACCCACCTGCACCAAGGGCCTAGATTCAGCGACAGTTTCAGAAATTCCCATGTTCGTGCACAAAACAGAGAAAACAGAGGAACTAGAATGTGTGATTTGTTTGAGCGTTATTGAGGAAGGTGAGATTGGAAGGAGGTTGCCAAAGTGTGGCCACGAGTTTCACGTGGAGTGCATTGACATGTGGTTTACTTCACATTGCAATTGTCCCATTTGTAGAGCTCCTATTCTGGTGAGCAATGATTCTCATCCGGCTTCTGATGATGGCGACGGCGTGTTTGAGATTGTTGTTGTTACACCAGGATATGAGATCAGTGAGAGCGAAATTGGTGGGATGAGTGGCTCTGTTCCAGAAACTTCTTCTTTGTTGGGTTTCTCTTTGAAGAGATTGCTGAGTAAGGTTTTTCTGTCACCTGATCATGTAACTGAATTAGATGCTTCACAATGA 708 0.4703 MPTQSESPSNSLSQLAQNVFSDNNSSIMLAAILSLLLVIIFVLLLHVYAKWFLSQSQLHSHTSRWRTPVTVSGVLEPSHFHSINIEASPTCTKGLDSATVSEIPMFVHKTEKTEELECVICLSVIEEGEIGRRLPKCGHEFHVECIDMWFTSHCNCPICRAPILVSNDSHPASDDGDGVFEIVVVTPGYEISESEIGGMSGSVPETSSLLGFSLKRLLSKVFLSPDHVTELDASQ* 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g01942 235 FunFam RING-H2 finger protein ATL1 82 165 - -
Lapu8g01942 235 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 16 167 - -
Lapu8g01942 235 CDD RING-H2_EL5-like 117 160 - -
Lapu8g01942 235 ProSiteProfiles Zinc finger RING-type profile. 118 160 IPR001841 -
Lapu8g01942 235 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 94 168 IPR013083 -
Lapu8g01942 235 Pfam Ring finger domain 117 160 IPR001841 -
Lapu8g01942 235 SMART ring_2 118 159 IPR001841 -
Lapu8g01942 235 SUPERFAMILY RING/U-box 105 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g01942 Lapu-Chr8 36934616 36935323 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g01942 27 161 Rapid Response to Elicitors AT3G16720 39.855 2.65e-27 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g01942 - - gmx:100777829 345.895