LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lapu8g01942	ATGCCCACTCAATCCGAGTCACCCAGTAACTCACTGAGTCAACTCGCTCAGAACGTGTTCTCCGACAACAACAGCAGCATCATGCTCGCAGCCATTCTTTCCTTGCTCCTAGTCATCATCTTCGTCCTTCTACTCCACGTGTACGCCAAGTGGTTCTTATCTCAGTCGCAATTACATTCTCACACTAGCCGGTGGCGAACTCCGGTGACCGTCTCCGGCGTTCTGGAACCTTCCCATTTCCACAGCATCAACATAGAAGCGTCACCCACCTGCACCAAGGGCCTAGATTCAGCGACAGTTTCAGAAATTCCCATGTTCGTGCACAAAACAGAGAAAACAGAGGAACTAGAATGTGTGATTTGTTTGAGCGTTATTGAGGAAGGTGAGATTGGAAGGAGGTTGCCAAAGTGTGGCCACGAGTTTCACGTGGAGTGCATTGACATGTGGTTTACTTCACATTGCAATTGTCCCATTTGTAGAGCTCCTATTCTGGTGAGCAATGATTCTCATCCGGCTTCTGATGATGGCGACGGCGTGTTTGAGATTGTTGTTGTTACACCAGGATATGAGATCAGTGAGAGCGAAATTGGTGGGATGAGTGGCTCTGTTCCAGAAACTTCTTCTTTGTTGGGTTTCTCTTTGAAGAGATTGCTGAGTAAGGTTTTTCTGTCACCTGATCATGTAACTGAATTAGATGCTTCACAATGA	708	0.4703	MPTQSESPSNSLSQLAQNVFSDNNSSIMLAAILSLLLVIIFVLLLHVYAKWFLSQSQLHSHTSRWRTPVTVSGVLEPSHFHSINIEASPTCTKGLDSATVSEIPMFVHKTEKTEELECVICLSVIEEGEIGRRLPKCGHEFHVECIDMWFTSHCNCPICRAPILVSNDSHPASDDGDGVFEIVVVTPGYEISESEIGGMSGSVPETSSLLGFSLKRLLSKVFLSPDHVTELDASQ*	236

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lapu8g01942	235	FunFam	RING-H2 finger protein ATL1	82	165	-	-
	Lapu8g01942	235	PANTHER	E3 UBIQUITIN-PROTEIN LIGASE ATL42	16	167	-	-
	Lapu8g01942	235	CDD	RING-H2_EL5-like	117	160	-	-
	Lapu8g01942	235	ProSiteProfiles	Zinc finger RING-type profile.	118	160	IPR001841	-
	Lapu8g01942	235	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	94	168	IPR013083	-
	Lapu8g01942	235	Pfam	Ring finger domain	117	160	IPR001841	-
	Lapu8g01942	235	SMART	ring_2	118	159	IPR001841	-
	Lapu8g01942	235	SUPERFAMILY	RING/U-box	105	167	-	-

Showing 1 to 8 of 8 entries

Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Lapu8g01942	Lapu-Chr8	36934616	36935323	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lapu8g01942	27	161	Rapid Response to Elicitors	AT3G16720	39.855	2.65e-27	104

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lapu8g01942	-		-	gmx:100777829	345.895

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