Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g01927 ATGGGTGGCAATTCCTCACCCTGTGCTTCCTGCAAGCTGCTGAGACGCCGTTGCTCTCAGGATTTCATCTTTGCTCCTTATTTTCCTTCCAATGATCTCCACAAGTTTGCCATTGTGCACAAGGTCTTTGGATGCAGCAATCTTACAAAAATGCTTAAGGATGTTCCGGTTGAGCAAAGAGAAGATGCAGTGACGAGTTTAGTTTATGAGGTAAATGCAAGAGTTAGAAACCCTGTTTATGGTTGTGTCGGAATCATATCTAACCTAGAAACTCAAGTTTATGAGTTACAGAAGCAGCTTGCAGTAGCTCAGGCAGAGATTCTCAGCATAAAAATGCAGCAAGAATTTACCTTCACCAATGCATTT 366 0.4235 MGGNSSPCASCKLLRRRCSQDFIFAPYFPSNDLHKFAIVHKVFGCSNLTKMLKDVPVEQREDAVTSLVYEVNARVRNPVYGCVGIISNLETQVYELQKQLAVAQAEILSIKMQQEFTFTNAF 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g01927 122 Coils Coil 86 106 - -
Lapu8g01927 122 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Lapu8g01927 122 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
Lapu8g01927 122 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g01927 Lapu-Chr8 36718460 36720388 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g01927 1 118 AS2 family AT2G30130 73.109 1.18e-59 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Lapu8g01927 LOB 4.9e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g01927 - - ming:122087650 181.8