Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g01904 ATGACCATGAACGGCCACGGCCACCATACCGTAAACATCAATAGGCACCCTAACGACGAAGACGACAAAGCCTTCCCTCCTTCCTCCTCCTCCGCCGACGACGACGACAACAGCAGCCACCGTGAAGATGACGACCAAGAACTCGTGGATCCCGACGATCCTTTCGACATTACTCAGACGAAGAACGCCTCGCACGACACGCTTCGCCGTTGGAGACAAGCAGCGCTCGTGCTCAATGCATCCAGGCGTTTTAGATATACTTTGGACTTGAAAAAGGAAGAAGAGAAAGAGCAAAAGAAACACTTGATTAGAGCCCATGCACAAGTCATAAGAGCAGCTCTGCTTTTCAGATTGGCCGGTGAACGTGAACTAGTGATAAGTACAGCAGTGTCACCCCCAACTCCAGTTGGTGATTATGATATTGGGCTCGAACAACTTGCTTCAATGTCTAAGGATCAGAATATTTCTGCTTTTCAACAATATGGAGGGATTAGAGGCTTATCAAACTTAATAAAATCTAATCCGGATAAAGGTATTAGTGGAGATGACGCTGATCTGTTAAAAAGGAAAAATGCGTTTGGAACTAATACATATCCTCGGAAAAAAGGAAGAAGTTTCTGGAGGTTTTTATGGGAAGCTTGGCAAGATCTAACTCTCATAATATTGATAATAGCTGCTGCGGTGTCATTAGCACTTGGAATAAAAACAGAGGGTTTGGCTGAAGGATGGTATGATGGGGGAAGCATTGCTTTTGCAGTTTTGCTTGTCATTGTAGTTACAGCTGTCAGCGATTATCGGCAATCTCTGCAGTTTCAGAATTTGAATTCAGAAAAACAAAATATACAATTGGAGGTTATTAGAAGTGGGAGAACAATTAAAATGTCAATATTTGATGTTGTTGTTGGTGATGTTATACCCCTTAAAATAGGAGATCAGGTTCCTGCAGATGGAGTATTAATCTCGGGCCATTCACTTGCAATTGATGAATCCAGTATGACTGGTGAAAGCAAGATTGTGCATAAGGATCACAAAACACCATTTTTGATGTCTGGTTGCAAAGTAGCGGATGGAGTTGGTGTTATGCTGGTAACTGGTGTTGGTATAAATACCGAATGGGGATTGCTGATGGCAAGTATCTCAGAGGACACTGGAGAAGAAACTCCGTTACAGGTACGCTTGAATGGAGTAGCAACTTTTATTGGTGTAGTTGGGCTTAGTGTAGCTGTTTTAGTGCTTGCTGTCCTCTTGGGCAGATACTTTTCCGGCCATACCAAAGATATAGATGGACAAGTTGAATTTGTTGCCGGAAAGACTACTGTCAGCAATGCAGTAGATGGGGTCATCAAAATTTTTACCATTGCAGTCACAATTGTGGTTGTTGCAGTGCCTGAAGGTCTACCTCTTGCTGTTACCTTAACCTTGGCATATTCAATGCGGAAAATGATGGCAGACAAGGCCTTGGTACGGCGGCTATCCGCCTGTGAAACTATGGGCTCTGCCACAACAATTTGCAGTGATAAGACAGGAACATTGACCTTAAATCAGATGACTGTAGTTGAGGCATATGTTGGGAGCAGAAAATTAAATCCACTGGACGACTCATCAAAGTTGCATCCAAAAGCATTGTCTCTGATAAATGAGGGCATTGCTCAGAATACCACCGGAAATGTTTTCGTACCTAAGGACGGTGGAGAGACAGAGGTGTCTGGATCTCCTACGGAGAAGGCAATTCTTTCATGGGCATTAAAGTTGGGAATGAATTTTGATGTTATCAGATCAAATTCAAAAGTTCTCCATGTCTTCCCCTTCAATTCTGAGAAAAAGCGAGGTGGCGTTGCTTTGAAGCTGGGGGGTTCTGAAGTACATATACATTGGAAAGGAGCTGCAGAGATAGTTCTAGGAGCGTGTACTCAATATCTCGATTCAGATGGTCAATTGCAATCCATTGAAGAGGAGCAGTCATTTTTCAAGGAGTCTATTGATGACATGGCCGCTCGCAGCTTGCGTTGTGTAGCCATTGCATACAGGTCATATGAACTAGACAGAGTTCCATCTAGTGAGCAGGACTTAGACCAATGGTCCTTACCGGAACATGAGCTTGTTTTGCTTGCTATTGTTGGAATAAAGGATCCTTGCCGCCCAAGTGTCAAAGATGCTGTAAAACTATGCTCTGATGCTGGTGTTAAGGTACGCATGGTTACTGGAGACAACCTCCAAACAGCAAAGGCAATCGCTTTGGAGTGTGGAATACTGGCTTCAAATGAAGATGCTGTTGAGCCTAATATAATTGAAGGAAAGAAATTCCGGGAACTATCTGAAAAGGAAAGAGAAGATATTGCCAAGAAAATAACTGTCATGGGGAGGTCTTCTCCTAATGACAAGCTTTTGCTTGTGCAAGCGCTACGTAAAGGAGGGGAAGTTGTTGCTGTCACAGGAGACGGCACCAATGATGCTCCTGCACTTCATGAGGCTGATATTGGTCTTTCTATGGGCATCCAAGGAACTGAAGTTGCAAAAGAAAGCTCAGATATTATAATCCTAGATGATAACTTTGCATCAGTAGTAAAGGTTGTCCGCTGGGGCCGCTCTGTATATGCAAATATTCAAAAATTTATTCAGTTCCAGCTTACTGTTAATGTTGCTGCTCTTGTAATAAATGTCGTGGCAGCAATAACTTCTGGTGATGTTCCTCTAAATGCAGTACAACTTTTGTGGGTCAACCTTATCATGGATACACTTGGGGCGCTTGCACTGGCCACTGAACCGCCAACAGACAGCCTAATGCGCAGATCACCAGTTGGGAGAAGAGAACCTCTTATAACAAATATCATGTGGAGAAACTTGATTGTACAGGCTGTCTATCAAATCACAGTTCTTCTCGTTCTTAACTTCCATGGTGAAAGTATTCTACCCAAACAAGATACTAGAGCAGATTCCTTTCAAGTGAAGAATACTTTAATATTCAATGCGTTCGTCCTGAGCCAAATATTCAACGAGTTCAATGCTCGGAAGCCAGAGGAATTGAATGTTTTCCGTGGAGTGACGATGAACAAACTTTTCATGGGAATTGTTGGAGTGACCTTTATACTTCAGATAATCATCATCGAGTTCCTTGGAAAGTTCACAACAACAGTGAGGCTTGATTGGAAGCTGTGGCTTGTTTCTCTTGTTATTGGCTTTGTCAGCTGGCCCCTTGCTATAGTTGGAAAATTCATTCCAGTACCCAAAACACCATTGGCTCGTTACTGCATGAAGCCACTGAGGAAATTTAAAAGATCTAGGTCTCGTGCTACACAATAG 3300 0.43 MTMNGHGHHTVNINRHPNDEDDKAFPPSSSSADDDDNSSHREDDDQELVDPDDPFDITQTKNASHDTLRRWRQAALVLNASRRFRYTLDLKKEEEKEQKKHLIRAHAQVIRAALLFRLAGERELVISTAVSPPTPVGDYDIGLEQLASMSKDQNISAFQQYGGIRGLSNLIKSNPDKGISGDDADLLKRKNAFGTNTYPRKKGRSFWRFLWEAWQDLTLIILIIAAAVSLALGIKTEGLAEGWYDGGSIAFAVLLVIVVTAVSDYRQSLQFQNLNSEKQNIQLEVIRSGRTIKMSIFDVVVGDVIPLKIGDQVPADGVLISGHSLAIDESSMTGESKIVHKDHKTPFLMSGCKVADGVGVMLVTGVGINTEWGLLMASISEDTGEETPLQVRLNGVATFIGVVGLSVAVLVLAVLLGRYFSGHTKDIDGQVEFVAGKTTVSNAVDGVIKIFTIAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTLNQMTVVEAYVGSRKLNPLDDSSKLHPKALSLINEGIAQNTTGNVFVPKDGGETEVSGSPTEKAILSWALKLGMNFDVIRSNSKVLHVFPFNSEKKRGGVALKLGGSEVHIHWKGAAEIVLGACTQYLDSDGQLQSIEEEQSFFKESIDDMAARSLRCVAIAYRSYELDRVPSSEQDLDQWSLPEHELVLLAIVGIKDPCRPSVKDAVKLCSDAGVKVRMVTGDNLQTAKAIALECGILASNEDAVEPNIIEGKKFRELSEKEREDIAKKITVMGRSSPNDKLLLVQALRKGGEVVAVTGDGTNDAPALHEADIGLSMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINVVAAITSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDSLMRRSPVGRREPLITNIMWRNLIVQAVYQITVLLVLNFHGESILPKQDTRADSFQVKNTLIFNAFVLSQIFNEFNARKPEELNVFRGVTMNKLFMGIVGVTFILQIIIIEFLGKFTTTVRLDWKLWLVSLVIGFVSWPLAIVGKFIPVPKTPLARYCMKPLRKFKRSRSRATQ* 1100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g01904 1099 MobiDBLite consensus disorder prediction 12 45 - -
Lapu8g01904 1099 FunFam Calcium-transporting ATPase 704 856 - -
Lapu8g01904 1099 Pfam Cation transporter/ATPase, N-terminus 163 229 IPR004014 -
Lapu8g01904 1099 Gene3D - 63 117 - -
Lapu8g01904 1099 Gene3D - 501 856 IPR023214 -
Lapu8g01904 1099 MobiDBLite consensus disorder prediction 1 64 - -
Lapu8g01904 1099 SUPERFAMILY Calcium ATPase, transmembrane domain M 162 1074 IPR023298 -
Lapu8g01904 1099 FunFam Calcium-transporting ATPase 260 380 - -
Lapu8g01904 1099 PRINTS Sodium/potassium-transporting ATPase signature 497 518 - -
Lapu8g01904 1099 PRINTS Sodium/potassium-transporting ATPase signature 247 267 - -
Lapu8g01904 1099 PRINTS Sodium/potassium-transporting ATPase signature 623 641 - -
Lapu8g01904 1099 SFLD C1.7: P-type atpase like 486 863 - -
Lapu8g01904 1099 PANTHER CATION TRANSPORTING ATPASE 104 1074 - -
Lapu8g01904 1099 Gene3D - 514 711 IPR023299 GO:0000166
Lapu8g01904 1099 Pfam Ca2+-ATPase N terminal autoinhibitory domain 52 95 IPR024750 GO:0005516
Lapu8g01904 1099 SFLD p-type atpase 486 863 IPR044492 -
Lapu8g01904 1099 FunFam Calcium-transporting ATPase 9 plasma membrane-type 358 528 - -
Lapu8g01904 1099 Gene3D - 212 1065 - -
Lapu8g01904 1099 Pfam haloacid dehalogenase-like hydrolase 501 825 - -
Lapu8g01904 1099 ProSitePatterns E1-E2 ATPases phosphorylation site. 506 512 IPR018303 -
Lapu8g01904 1099 NCBIfam calcium-translocating P-type ATPase, PMCA-type 151 1074 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Lapu8g01904 1099 PRINTS P-type cation-transporting ATPase superfamily signature 328 342 - -
Lapu8g01904 1099 PRINTS P-type cation-transporting ATPase superfamily signature 726 736 - -
Lapu8g01904 1099 PRINTS P-type cation-transporting ATPase superfamily signature 704 715 - -
Lapu8g01904 1099 PRINTS P-type cation-transporting ATPase superfamily signature 504 518 - -
Lapu8g01904 1099 PRINTS P-type cation-transporting ATPase superfamily signature 835 847 - -
Lapu8g01904 1099 PRINTS P-type cation-transporting ATPase superfamily signature 811 830 - -
Lapu8g01904 1099 FunFam Calcium-transporting ATPase 63 119 - -
Lapu8g01904 1099 SUPERFAMILY HAD-like 502 916 IPR036412 -
Lapu8g01904 1099 SUPERFAMILY Calcium ATPase, transduction domain A 282 377 IPR008250 -
Lapu8g01904 1099 Pfam E1-E2 ATPase 281 482 - -
Lapu8g01904 1099 FunFam Calcium-transporting ATPase 212 269 - -
Lapu8g01904 1099 Pfam Cation transporting ATPase, C-terminus 896 1071 IPR006068 -
Lapu8g01904 1099 CDD P-type_ATPase_Ca_PMCA-like 186 944 - -
Lapu8g01904 1099 FunFam Calcium-transporting ATPase 828 1076 - -
Lapu8g01904 1099 NCBIfam HAD-IC family P-type ATPase 440 529 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lapu8g01904 1099 NCBIfam HAD-IC family P-type ATPase 778 892 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lapu8g01904 1099 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 511 708 IPR023299 GO:0000166
Lapu8g01904 1099 Gene3D - 185 380 - -
Lapu8g01904 1099 FunFam Calcium-transporting ATPase 514 711 - -
Lapu8g01904 1099 SMART Cation_ATPase_N_a_2 160 234 IPR004014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g01904 Lapu-Chr8 36530559 36553748 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g01904 29 1095 Primary Pumps ATPases AT3G21180 76.217 0.0 1653
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g01904 K01537 - gmx:100777845 1915.58