Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g01901 ATGGATGGTATTCACGGGGGTGATTCTCGGATACACATCAATGATGGACAACATCCTATACATGTGCCATATGTGCAAGAACATGAGCATCACGGACTGCACCATATGAGCAATGGGAATGGGATTGATGAGGATCAGAATGATGGTGGTGATACTAACTGTGGTGGAAGTGAGAATGCGGAAGGTGATATCCCCTCCAGCCATGGAAATCTCCCTGACAATCACGCTGTAATAATGGATCAAGGGGGTGATGCTGGGGACCAGCTTACGTTGTCTTTTCAGGGCCAAGTTTATGTCTTTGACGCCGTTTCACCAGAAAAGGTTCAAGCTGTATTGCTATTACTGGGAGGCCGCGAAATACCTCCAACTATGCCTACCATGCCAGTGTCTCCTCACCATAATAACCGGGGATTTACTGGTACTCCGCAAAAATTCAGTGTCCCTCAGAGATTAGCTTCATTGATTAGGTTTCGTGAAAAGCGGAAGGAACGAAATTTTGACAAAAAAATTCGGTATACTGTTCGGAAAGAAGTAGCATTAAGGATGCAAAGGAATAAAGGTCAGTTTACATCTTCAAAGTCCAATCATGATGAATCTGCATCAGCTGCAACAAATTGGGGGGCGAATGAGAACTGGTCATCAGAGAATAATGGATCCCAGCAGCAAGACATTGTTTGTAGGCATTGTGGCATCAGTGAGAAGTGCACGCCAATGATGCGACGTGGGCCTGAAGGGCCAAGAACCCTCTGCAATGCTTGTGGTCTTATGTGGGCAAATAAGGGAACCCTGAGGGACTTGTCAAGGGCGGCACCCATATCTGGACCAATCAAAAATGAGAATAAAAGTTTAGAGGCCAACCAGATAGTCCATAGAGTTGCAGGAGAAGCTGATGATTCGTCGTGA 903 0.4585 MDGIHGGDSRIHINDGQHPIHVPYVQEHEHHGLHHMSNGNGIDEDQNDGGDTNCGGSENAEGDIPSSHGNLPDNHAVIMDQGGDAGDQLTLSFQGQVYVFDAVSPEKVQAVLLLLGGREIPPTMPTMPVSPHHNNRGFTGTPQKFSVPQRLASLIRFREKRKERNFDKKIRYTVRKEVALRMQRNKGQFTSSKSNHDESASAATNWGANENWSSENNGSQQQDIVCRHCGISEKCTPMMRRGPEGPRTLCNACGLMWANKGTLRDLSRAAPISGPIKNENKSLEANQIVHRVAGEADDSS* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g01901 300 SMART tify_2 82 117 IPR010399 -
Lapu8g01901 300 CDD ZnF_GATA 225 281 IPR000679 GO:0006355|GO:0043565
Lapu8g01901 300 SMART GATA_3 220 273 IPR000679 GO:0006355|GO:0043565
Lapu8g01901 300 Pfam tify domain 87 116 IPR010399 -
Lapu8g01901 300 MobiDBLite consensus disorder prediction 184 219 - -
Lapu8g01901 300 ProSiteProfiles Tify domain profile. 82 117 IPR010399 -
Lapu8g01901 300 ProSiteProfiles GATA-type zinc finger domain profile. 220 279 IPR000679 GO:0006355|GO:0043565
Lapu8g01901 300 MobiDBLite consensus disorder prediction 32 74 - -
Lapu8g01901 300 ProSiteProfiles CCT domain profile. 150 192 IPR010402 GO:0005515
Lapu8g01901 300 ProSitePatterns GATA-type zinc finger domain. 226 253 IPR000679 GO:0006355|GO:0043565
Lapu8g01901 300 Gene3D - 216 282 IPR013088 GO:0006355|GO:0008270
Lapu8g01901 300 MobiDBLite consensus disorder prediction 40 64 - -
Lapu8g01901 300 Pfam CCT motif 150 192 IPR010402 GO:0005515
Lapu8g01901 300 PANTHER GATA TRANSCRIPTION FACTOR 28 26 282 IPR045280 GO:0006355
Lapu8g01901 300 MobiDBLite consensus disorder prediction 183 219 - -
Lapu8g01901 300 Pfam GATA zinc finger 226 262 IPR000679 GO:0006355|GO:0043565
Lapu8g01901 300 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 221 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g01901 Lapu-Chr8 36497104 36504898 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g01901 1 299 Tify Gene Family AT1G51600 63.192 2.67e-135 383
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lapu8g01901 CCT 8.6e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g01901 - - pvu:PHAVU_008G254600g 603.979