Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g01892 ATGGATGCAGTGTATCTAGGGGCATATGATGATGAAGAAGCTGCAGCACGAGCATATGATTTGGCAGCACTGAAGTACTGGGGTCAAGATACCATTCTCAATTTCCCAATAACAAATTATGAGGAGAAACTCAAGGAAATGGAGGGTCAATCAAAGGAAGAATACATTGGATCATTGAGAAGAAAAAGCAGTGGATTCTCTCGAGGAGTTTCAAAATACAGAGGCGTAGCAAGACACCACCATAATGGAAGATGGGAAGCTCGAATCGGCAGGGTCTTTGGCAACAAATATCTATATCTTGGAACTTACGCAACACAAGAAGAAGCAGCAGCAGCATATGACATGGCAGCCATAGAATACAGAGGACCTAACGCTGTTACAAACTTTGACGTGAGTCGTTATATCAATTGGCCAGGTCCTAAAACTGAAGAAGAACACCAAAATGTTCCCATAAACGAAAACGTAAACCCTAATGCAGAAATAGAACTAGGGTTTGGTTCACATGAACTTGGTTCAACCAGTGATGAGATCACAACAGAGGATGCAGCACAATCTTCAGAGTCAAATCCTTCTCGTCGCACATTCCCTGAAGACATTCAAACAATTTTTGAGAGTCAAGGGCCAAGCATCTACACTGAAAATGATGATATCATTTTTGGTGACTTGGGTTCATTTGGTGCACCAATTTTTCATTACGAGCTTGATGTTTAG 711 0.4149 MDAVYLGAYDDEEAAARAYDLAALKYWGQDTILNFPITNYEEKLKEMEGQSKEEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAAAAYDMAAIEYRGPNAVTNFDVSRYINWPGPKTEEEHQNVPINENVNPNAEIELGFGSHELGSTSDEITTEDAAQSSESNPSRRTFPEDIQTIFESQGPSIYTENDDIIFGDLGSFGAPIFHYELDV* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g01892 236 PRINTS Ethylene responsive element binding protein signature 73 84 IPR001471 GO:0003700|GO:0006355
Lapu8g01892 236 PRINTS Ethylene responsive element binding protein signature 112 132 IPR001471 GO:0003700|GO:0006355
Lapu8g01892 236 MobiDBLite consensus disorder prediction 171 195 - -
Lapu8g01892 236 CDD AP2 71 132 IPR001471 GO:0003700|GO:0006355
Lapu8g01892 236 SUPERFAMILY DNA-binding domain 71 132 IPR016177 GO:0003677
Lapu8g01892 236 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 4 156 - -
Lapu8g01892 236 Pfam AP2 domain 71 122 IPR001471 GO:0003700|GO:0006355
Lapu8g01892 236 SUPERFAMILY DNA-binding domain 4 37 IPR016177 GO:0003677
Lapu8g01892 236 ProSiteProfiles AP2/ERF domain profile. 72 130 IPR001471 GO:0003700|GO:0006355
Lapu8g01892 236 SMART rav1_2 72 136 IPR001471 GO:0003700|GO:0006355
Lapu8g01892 236 SMART rav1_2 1 42 IPR001471 GO:0003700|GO:0006355
Lapu8g01892 236 Gene3D AP2/ERF domain 1 38 IPR036955 GO:0003700|GO:0006355
Lapu8g01892 236 Gene3D AP2/ERF domain 71 132 IPR036955 GO:0003700|GO:0006355
Lapu8g01892 236 MobiDBLite consensus disorder prediction 168 195 - -
Lapu8g01892 236 ProSiteProfiles AP2/ERF domain profile. 1 36 IPR001471 GO:0003700|GO:0006355
Lapu8g01892 236 FunFam AP2-like ethylene-responsive transcription factor 71 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g01892 Lapu-Chr8 36413473 36417399 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g01892 1 235 AP2-EREBP Transcription Factor Family AT1G79700 62.979 4.60e-81 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lapu8g01892 AP2 1.7e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g01892 K09285 - gmx:100807781 396.741