Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g01874 ATGTTATCAGGGGACATACCTCCAAACCAGACCATTTACATCAAGAATCTCAATGAGAAGGTCAAGAAAGAAGAGTTGAAGAGATCACTGTATTGCTTGTTTTCTCAATATGGAAGAATTTTGGATGTTGTTGCTCTAAAGACACCCAAACTTCGAGGTCAGGCATGGGTTTGTTTCAGTGAAGTCACTGCAGCCAGTAATGCTGTGAGACAAATGCAAAACTTCCCATTTTATGAAAAACCTATGAGAATCCAATATGCAAAAACAAAGTCAGATTGTATTGCAAAAGAAGAGGGTAGTTATGTTCCCAGGGAAAAGAAGAAGAAACAAGAGGAGAAAGCTGAAAGAAAGCGGCGTGCTGAGGAAGCACAACAATCTGCTGGGGCTAATGGAACACACAGTGCAAGTAACGGTGGTCCAACTGCATCGTTCCGTCAAGGACCCAATGCCCAAGAAACAGCTGCACCTAATAATATTTTGTTCATAGAGAATTTGCCTCATGAAACTACTGGTAGGATGCTTGAAATGCTCTTCGAGCAATACCCAGGTTTTAAGGAAGTGCGCTTGATTGAAGCCAAGCCAGGAATTGCATTTGTTGATTTTGAAGATGAGGTGCAATCATCCATGGCCATGCAGGCTCTTGATGGCTTCAAAATCACTCCACTGAATCCCATGAATATAACCTTTGCTAAGAAGTAG 699 0.4177 MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYCLFSQYGRILDVVALKTPKLRGQAWVCFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKEEGSYVPREKKKKQEEKAERKRRAEEAQQSAGANGTHSASNGGPTASFRQGPNAQETAAPNNILFIENLPHETTGRMLEMLFEQYPGFKEVRLIEAKPGIAFVDFEDEVQSSMAMQALDGFKITPLNPMNITFAKK* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g01874 232 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 81 IPR000504 GO:0003723
Lapu8g01874 232 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 160 219 IPR000504 GO:0003723
Lapu8g01874 232 CDD RRM1_U1A_like 11 88 - -
Lapu8g01874 232 Coils Coil 104 126 - -
Lapu8g01874 232 FunFam U2 small nuclear ribonucleoprotein B'' 149 232 - -
Lapu8g01874 232 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 158 232 IPR000504 GO:0003723
Lapu8g01874 232 SMART rrm1_1 159 228 IPR000504 GO:0003723
Lapu8g01874 232 SMART rrm1_1 11 85 IPR000504 GO:0003723
Lapu8g01874 232 Gene3D - 147 232 IPR012677 -
Lapu8g01874 232 FunFam U1 small nuclear ribonucleoprotein A 4 109 - -
Lapu8g01874 232 Gene3D - 4 118 IPR012677 -
Lapu8g01874 232 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 89 IPR000504 GO:0003723
Lapu8g01874 232 CDD RRM2_U1A_like 156 228 - -
Lapu8g01874 232 MobiDBLite consensus disorder prediction 125 150 - -
Lapu8g01874 232 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 9 89 - -
Lapu8g01874 232 MobiDBLite consensus disorder prediction 98 150 - -
Lapu8g01874 232 MobiDBLite consensus disorder prediction 98 123 - -
Lapu8g01874 232 SUPERFAMILY RNA-binding domain, RBD 8 219 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g01874 Lapu-Chr8 36035083 36038938 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g01874 3 232 Eukaryotic Initiation Factors Gene Family AT1G71770 22.458 1.47e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g01874 K11094 - gmx:100805822 412.92