Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g01859 ATGGAGATATCTTTGTTGAAGGTTCTATCTGATGCAATATCCTCATTTTTGCATTTATCATTTTCTGAAAAAATGAAGTTAGAACCTGTATCAAAATATTACCAAAAGGCAGAGAAGATGCTTAAGCTGTTGAAGCCGATTATTGATACCACTGTTTTTTCAGATATAGCTTCTGATGAAGTGCTTAGTAAACTATTTGAGGAACTTGGTCTGGCAGTTGATGAGTTGAAGGAGCTTATTCTGAACTGGCTTCCATTATCTAGCAAATTTTACTTTGTTAATCAAGTTGATCCCTTGATATCAACAATTCAGGCTTTGGGTCTCAGTATTTTACAACAGCTGGAGGATTCACCGCAATGTCTCCCTGATAGTTTGGGAAATGAAACATCATCAACCATTAAAAAAGCTATTATGGAACAACTAGAAGGTGTAGGACCAAGTTTGGAGGTCCTGGAAAACATTGCTGACAACCTGGGTCTAAGGTCTAGTCAAGAGGTCCTGATTGAGGCTGTAGCTCTTGAAAAGTTGAAGGAGAAGGCTGAACAAATTGAAAACACTGCAGAAGTTGAATATGTCGATAAAATGATCTCAGTTGTAAATCAAATGTATGAGCATCTTGTTATGCTTAAGCAAACTCAGAGCTCTCTCCCAGTGTCAGTGCCTGCTGATTTTTGCTGTCCTCTCTCTTTGGAATTGATGACAGATCCGGTCATTGTGGCATCTGGACAAACATATGAGCGGGCTTTCATCAGGAACTGGATAGACCTAGGTCTTACTGTTTGTCCGAAGACACGCCAGACTCTGGTCCACACCAATCTAATACCTAACTACACTGTAAAAGCATTAATTGCTAACTGGTGCGAAACACATGATGTGAAGCTTGCTGATCCCATTAAATCCAAAAGCTTAAATCAGCCGTCTCCCTTTCATGGATCTATGGAGTCTGGTTTGACCAAGGATTTGCATGTTGTAAGTAGTGGTGAAACCCACCAAGAACGAACGACAACATTGCATCCCTCTTCTATTCCAGGTGGTTCCTTAAATGGCACGGTGCATGAGCCATTTGTGGATCTTGAAAGAATATCACACACAGGTTCAGATGATGGATCTGCTAGCTCAGATGAGGGGAGCACCGACTCAGTTGGTGAATCATTAACATCACCATCCACAAATGCCTTGAGCTCAGAACAATCTCGAACTGATGTTAGAACTACTTCTGATATCAACAATACTCTGCTGTCAACCAGTTCAGTCCACAGTCGGGATGCTTCTGGGGAATTGAATTCAGGGAAAGATGCTGTTCCGTTGCCAACTCGGCATAGAGAATCCGAGTTTTCACCCCAATTAGCAGTGCCAAGGTCTCAAAGCCAAACTATATGGCAACGGTCATCTGACTGGCTTGTTCCTAGGGTAGTGTCTACTATTGAAAAAAGAGCTGATCTTTCTGCTGCTGAAACCCAGGTTCGGAAATTAGTGGAGCGGTTAAAGATTGATTCTCTTGATGCTAAGAGAGAGGCAACATCAGAACTCCGCCTTCTTGCTAAGCACAATATGGATAACCGAATTGTGATTTCAAATTGTGGAGCCATTAGCTTATTAGTTGATTTACTGCAATCAACTGATACTATAATCCAGGAAAATTCTGTTACAGCTCTCCTTAACTTATCGATCAATGATAACAACAAGGCTGCTATTGCAAATGCTGGTGCAATTGAACCTTTGATTCATGTCCTTAAGACAGGGAGTCCAGAAGCCAAGGAAAATTCAGCTGCCACTCTTTTCAGTCTCTCAGTTACTGAGGAAAACAAAATCAGGATAGGGAGGTCTGGGGCAATCAGACCACTGGTTGATTTGTTGGGAACCGGAACCCCTAGGGGGAAGAAAGATGCTGCCACTGCCTTGTTTAATTTGTCCATATTTCATGAAAACAAGGACCGGATTGTGCAAGCCGGTGCTGTGAAACACCTTGTAGAGTTAATGGACCCAGCAGCTGGAATGGTCGATAAGGCTGTGGCTGTTTTAGCAAATCTTGCTACAATACCAGAAGGGAAAGCAGAAATTGGTGATCAAGGTGGGATTCCTGTTTTGGTTGAGGTTATTGAGTTGGGTTCTACAAGAGGAAAGGAGAACGCCGCAGCGGCTCTTCTACATCTATGCTCAGACAATCACAGATATTTAAACAGGGTGCTCCAAGAAGGAGCTGTGCCACCTTTAGTAGCATTGTCACAATCAGGCACCCCAAGGGCCAAAGAGAAGGCCCTTGCTCTCCTTAATCAATTTAGAAGCCAAAGACACGGTGGTGCTGGGAGAGCTTGA 2316 0.4275 MEISLLKVLSDAISSFLHLSFSEKMKLEPVSKYYQKAEKMLKLLKPIIDTTVFSDIASDEVLSKLFEELGLAVDELKELILNWLPLSSKFYFVNQVDPLISTIQALGLSILQQLEDSPQCLPDSLGNETSSTIKKAIMEQLEGVGPSLEVLENIADNLGLRSSQEVLIEAVALEKLKEKAEQIENTAEVEYVDKMISVVNQMYEHLVMLKQTQSSLPVSVPADFCCPLSLELMTDPVIVASGQTYERAFIRNWIDLGLTVCPKTRQTLVHTNLIPNYTVKALIANWCETHDVKLADPIKSKSLNQPSPFHGSMESGLTKDLHVVSSGETHQERTTTLHPSSIPGGSLNGTVHEPFVDLERISHTGSDDGSASSDEGSTDSVGESLTSPSTNALSSEQSRTDVRTTSDINNTLLSTSSVHSRDASGELNSGKDAVPLPTRHRESEFSPQLAVPRSQSQTIWQRSSDWLVPRVVSTIEKRADLSAAETQVRKLVERLKIDSLDAKREATSELRLLAKHNMDNRIVISNCGAISLLVDLLQSTDTIIQENSVTALLNLSINDNNKAAIANAGAIEPLIHVLKTGSPEAKENSAATLFSLSVTEENKIRIGRSGAIRPLVDLLGTGTPRGKKDAATALFNLSIFHENKDRIVQAGAVKHLVELMDPAAGMVDKAVAVLANLATIPEGKAEIGDQGGIPVLVEVIELGSTRGKENAAAALLHLCSDNHRYLNRVLQEGAVPPLVALSQSGTPRAKEKALALLNQFRSQRHGGAGRA* 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g01859 771 SMART Ubox_2 223 286 IPR003613 GO:0004842|GO:0016567
Lapu8g01859 771 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 528 570 IPR000225 GO:0005515
Lapu8g01859 771 Pfam U-box domain 220 290 IPR003613 GO:0004842|GO:0016567
Lapu8g01859 771 Gene3D - 467 766 IPR011989 -
Lapu8g01859 771 MobiDBLite consensus disorder prediction 324 449 - -
Lapu8g01859 771 Pfam Armadillo/beta-catenin-like repeat 642 678 IPR000225 GO:0005515
Lapu8g01859 771 Pfam Armadillo/beta-catenin-like repeat 519 556 IPR000225 GO:0005515
Lapu8g01859 771 Pfam Armadillo/beta-catenin-like repeat 558 597 IPR000225 GO:0005515
Lapu8g01859 771 Pfam Armadillo/beta-catenin-like repeat 600 638 IPR000225 GO:0005515
Lapu8g01859 771 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 219 294 IPR013083 -
Lapu8g01859 771 FunFam RING-type E3 ubiquitin transferase 472 766 - -
Lapu8g01859 771 SUPERFAMILY ARM repeat 487 760 IPR016024 -
Lapu8g01859 771 MobiDBLite consensus disorder prediction 365 424 - -
Lapu8g01859 771 FunFam RING-type E3 ubiquitin transferase 219 294 - -
Lapu8g01859 771 CDD RING-Ubox_PUB 221 273 IPR045210 -
Lapu8g01859 771 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 569 611 IPR000225 GO:0005515
Lapu8g01859 771 SMART arm_5 680 720 IPR000225 GO:0005515
Lapu8g01859 771 SMART arm_5 599 639 IPR000225 GO:0005515
Lapu8g01859 771 SMART arm_5 640 679 IPR000225 GO:0005515
Lapu8g01859 771 SMART arm_5 721 762 IPR000225 GO:0005515
Lapu8g01859 771 SMART arm_5 517 557 IPR000225 GO:0005515
Lapu8g01859 771 SMART arm_5 558 598 IPR000225 GO:0005515
Lapu8g01859 771 MobiDBLite consensus disorder prediction 324 347 - -
Lapu8g01859 771 PANTHER U BOX DOMAIN-CONTAINING 29 759 - -
Lapu8g01859 771 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 610 652 IPR000225 GO:0005515
Lapu8g01859 771 Coils Coil 173 193 - -
Lapu8g01859 771 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 651 692 IPR000225 GO:0005515
Lapu8g01859 771 ProSiteProfiles U-box domain profile. 219 293 IPR003613 GO:0004842|GO:0016567
Lapu8g01859 771 SUPERFAMILY RING/U-box 208 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g01859 Lapu-Chr8 35830615 35836488 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g01859 180 771 U-box Gene Family AT2G23140 59.718 0.0 681
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g01859 - - gmx:100777715 1242.25