LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lapu8g01854	ATGTGCTCTGTCTCTGAGATCCATAAGGTTATGTTCTTGCTATCACTGCCCATCTTAATTGGTAACAGTGGAGCAAAAATCTCTGGCTCATCCTTTCAGTATTACTTTATGCATAATTGGAACACAAGTTATTTTGATGTGCCTGTTGTGTTAAACAAATCAATCATCTTGATGCAAAAATATGAACTAGGAAGGTTACTAGGCAAAGGAACGTCTGGAAAGGTTTACTATGGACGTAATACACTGACTAACCAAAGTGTGGCCATTAAAGTGATTGACAAGAACAAGGCTATAAAAACTGGGCAGGCTGACCACATTAAAAGGGAAATATCTATTATGAGACTGGTCAAACACCCGAATATTATTGAGCTTTTTGAGGTCATGGCCACAAAGAGTAAGATTTACTTTGTTATGGAATATGCTAAAGGTGGAGAGCTGTTTAAGAAGGTGGCCAAAGGAAAGCTCAAAGAAGATGTTGCACACAAATACTTCAGGCAGCTAATCAATGCAGTGGATTTTTGTCACAGTAGAGGTGTATGCCATAGAGATATAAAGCCAGAGAACATTCTGTTGGATGAAAATGATAATTTGAAGATCTCGGATTTCGGGTTAGGTGCCCTGGCTGAATCCAAACACCAAGATGGCATGTTGCACACAGCTTGTGGAACACCTGCCTATGTTGCTCCTGAGGTCATCAAAAGGAAAGGTTATGATGGTGCCAAAGCTGATATTTGGTCATGTGGGGTAGTTTTATTTGTCTTACTGGCAAGTTATATTCCTTTTCAAGATCCAAATTTGATGGTGATGTATAGGAAGATAAGCAAGGCAGAGTTTACATGTCCTAGATGGTTCCCAGGAGGAGTTCGGAGGTTATTGAGCAAGATGTTGGATCCAAATCCAAATACTAGGATTTCCATAGATAAGATTAAGCAATGTTCTTGGTTTAATAAGTGGCCAAATGGTAGACAGACAACACAAGAAGGGGAAAACAGGAGTGTCTCTCCTTCAATTACAAATAATTCTGAACAATGTGGTGATGGAAGTAATGGTCTAGCAGCAGAAGCAAGACAAGAGTCCGTTGTGCCAATAAGTATAAATGCCTTCGATATTATCTCCCTTTCACCTGGGTTTAATCTTTGTGGATTCTTTGAAGACAGCATTCAGAAAAGGGAAGCAAGATTTACTTCAAGACAACCAGCATCTCTCATCATCTTCAAGCTGGAAGAAATCGCAAAGCGGCTGAAGATGAAAATAAAGAAAAGGGCTGCCGGTTTGCTGAAATTAGAGGGCCTTAATGAAGGTAGGAAGGGGATCTTATCCATTGATGCAGAGATCTTTGAGGTAACTCCACTATTGCACTTGGTGGAGGTGAAGAAATCAAATGGAGATACGCTTGAATATGAGAAAATATTGAAAGAAGCCATAAGGCCTGCTCTTAAAGATATTGTCTGGGTATGGCAAGGTGACCAACAACAGTAA	1479	0.3989	MCSVSEIHKVMFLLSLPILIGNSGAKISGSSFQYYFMHNWNTSYFDVPVVLNKSIILMQKYELGRLLGKGTSGKVYYGRNTLTNQSVAIKVIDKNKAIKTGQADHIKREISIMRLVKHPNIIELFEVMATKSKIYFVMEYAKGGELFKKVAKGKLKEDVAHKYFRQLINAVDFCHSRGVCHRDIKPENILLDENDNLKISDFGLGALAESKHQDGMLHTACGTPAYVAPEVIKRKGYDGAKADIWSCGVVLFVLLASYIPFQDPNLMVMYRKISKAEFTCPRWFPGGVRRLLSKMLDPNPNTRISIDKIKQCSWFNKWPNGRQTTQEGENRSVSPSITNNSEQCGDGSNGLAAEARQESVVPISINAFDIISLSPGFNLCGFFEDSIQKREARFTSRQPASLIIFKLEEIAKRLKMKIKKRAAGLLKLEGLNEGRKGILSIDAEIFEVTPLLHLVEVKKSNGDTLEYEKILKEAIRPALKDIVWVWQGDQQQ*	493

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lapu8g01854	492	Pfam	Protein kinase domain	61	315	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lapu8g01854	492	Gene3D	Transferase(Phosphotransferase) domain 1	53	362	-	-
	Lapu8g01854	492	Gene3D	Kinase associated domain 1, KA1	363	485	-	-
	Lapu8g01854	492	FunFam	Non-specific serine/threonine protein kinase	52	140	-	-
	Lapu8g01854	492	CDD	CIPK_C	366	480	-	-
	Lapu8g01854	492	FunFam	Non-specific serine/threonine protein kinase	360	484	-	-
	Lapu8g01854	492	MobiDBLite	consensus disorder prediction	320	349	-	-
	Lapu8g01854	492	FunFam	Non-specific serine/threonine protein kinase	55	352	-	-
	Lapu8g01854	492	ProSiteProfiles	NAF domain profile.	360	384	IPR018451	GO:0007165
	Lapu8g01854	492	CDD	STKc_SnRK3	60	314	-	-
	Lapu8g01854	492	ProSiteProfiles	Protein kinase domain profile.	61	315	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lapu8g01854	492	ProSitePatterns	Protein kinases ATP-binding region signature.	67	90	IPR017441	GO:0005524
	Lapu8g01854	492	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	179	191	IPR008271	GO:0004672\|GO:0006468
	Lapu8g01854	492	MobiDBLite	consensus disorder prediction	320	347	-	-
	Lapu8g01854	492	PANTHER	CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED	52	480	-	-
	Lapu8g01854	492	SMART	serkin_6	61	315	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lapu8g01854	492	Pfam	NAF domain	362	420	IPR004041	GO:0007165
	Lapu8g01854	492	SUPERFAMILY	Protein kinase-like (PK-like)	57	334	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lapu8g01854	Lapu-Chr8	35791040	35792908	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lapu8g01854	52	492	CBL-interacting serine-threonine protein kinases	AT5G58380	64.159	0.0	598

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CAMKL-CHK1	Lapu8g01854		Pkinase	5.8e-75	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lapu8g01854	-		K07198	gmx:100779316	775.393