Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g01852 ATGCCGGAAATCGAACACGCGGCCGCGGCGGAGAGCACCGTCCTCTTCGGAAAATACGAGGTGGGAAGGCTCCTAGGGTGCGGCGCGTTCGCAAAGGTGTACCATGCGCGTAACACCGACACGGGGCAGAGCGTGGCAGTGAAAGTCGTAAGCAAGAAGAAACTAACCGCAACAGGGTTGGCCACCAACGTGAAGCGCGAGATCGCCATCATGAGCCGTCTTCACCACCCCAACATCGTGAAACTCCACGAAGTGTTGGCGACCAAGACCAAAATCTACTTTATCTTGGAATTCGCGAAAGGCGGCGAGCTCTTCTCGAGAATCGCGAAGGGTCGATTCGGCGAAGATCTCGCGCGACGGTACTTCCAGCAGTTGGTCTCCGCCGTCGGGTACTGCCACGCGCGCGGTGTTTTCCACCGCGACTTGAAGCCGGAGAACCTACTTCTGGACGAGCAGGGAAACCTTAAAGTCTCCGACTTTGGACTCGGCGCGGTGAAGGAGCAGATAGGGGTGGATGGGATGCTGCACACGCTATGTGGTACCCCTGCTTACGTGGCACCGGAGATTTTGGGGAAGAAAGGTTACGACGGGGCTAAGGTTGATGTTTGGTCTTGTGGGGTTATTCTCTTTGTTCTTGTGGCTGGGTATCTACCGTTCAATGACCCGAATCTCATGGTGATGTATAGGAAGATTTACAAGGGGGAGTTTCGGTGTCCGAGGTGGTTTTCGACGGAGCTAAGGAGGTTTCTGGCAAGACTGTTGGATACGAATCCCGAGACGAGGATAACCGTTGATGAGATTTTGAAGGACGCGTGGTTCAAAAAGGGGTACAAGGAAGTTACTTTTGGCGATTTGGGGTTGGAGTGGAAAAGTGAGGGTGATGAGGTGAAGGATTTGAACGCGTTTGATATCATTTCTTTCTCAACAGGGTTGAATCTCTCCGGTTTGTTTGATTCGTGTAATGGGGTGGAAGAGGGAGAGAGGTTTTTGCTGAAGGAATCGCCGGAGAAGGTGGTGGAGAAGGTAGTGGCGGCGGCGGCTACAGTCGAGGGTATTGTGGTGCGGAGGAGGAAGGAATGTGGGGTGGAGTTGGAGGGGTGTGATGGTAATTTCGCCGCTCTGGTGGAGGTTTACCGGTTATCGGAGGAACTGGTTGTGGTTGAGGTGAGAAGGAGGGATGGGAATGGTGGAGTTTTTAGGGATGTGTGGAGGAATAAGCTGAGGCCGCATCTCTGTGCCGCAAGTAGCAGTACGACGTCGGATCCGGAGGAAACTGAACACAACTAG 1287 0.5377 MPEIEHAAAAESTVLFGKYEVGRLLGCGAFAKVYHARNTDTGQSVAVKVVSKKKLTATGLATNVKREIAIMSRLHHPNIVKLHEVLATKTKIYFILEFAKGGELFSRIAKGRFGEDLARRYFQQLVSAVGYCHARGVFHRDLKPENLLLDEQGNLKVSDFGLGAVKEQIGVDGMLHTLCGTPAYVAPEILGKKGYDGAKVDVWSCGVILFVLVAGYLPFNDPNLMVMYRKIYKGEFRCPRWFSTELRRFLARLLDTNPETRITVDEILKDAWFKKGYKEVTFGDLGLEWKSEGDEVKDLNAFDIISFSTGLNLSGLFDSCNGVEEGERFLLKESPEKVVEKVVAAAATVEGIVVRRRKECGVELEGCDGNFAALVEVYRLSEELVVVEVRRRDGNGGVFRDVWRNKLRPHLCAASSSTTSDPEETEHN* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g01852 428 Pfam Protein kinase domain 19 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu8g01852 428 Pfam NAF domain 298 349 IPR004041 GO:0007165
Lapu8g01852 428 ProSitePatterns Serine/Threonine protein kinases active-site signature. 137 149 IPR008271 GO:0004672|GO:0006468
Lapu8g01852 428 SMART serkin_6 19 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu8g01852 428 FunFam Non-specific serine/threonine protein kinase 10 98 - -
Lapu8g01852 428 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 13 392 - -
Lapu8g01852 428 SUPERFAMILY Protein kinase-like (PK-like) 15 280 IPR011009 -
Lapu8g01852 428 ProSiteProfiles Protein kinase domain profile. 19 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu8g01852 428 Gene3D Kinase associated domain 1, KA1 299 414 - -
Lapu8g01852 428 ProSiteProfiles NAF domain profile. 294 318 IPR018451 GO:0007165
Lapu8g01852 428 ProSitePatterns Protein kinases ATP-binding region signature. 25 48 IPR017441 GO:0005524
Lapu8g01852 428 Gene3D Transferase(Phosphotransferase) domain 1 9 298 - -
Lapu8g01852 428 FunFam Non-specific serine/threonine protein kinase 9 301 - -
Lapu8g01852 428 CDD CIPK_C 300 412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g01852 Lapu-Chr8 35778681 35780205 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g01852 1 420 CBL-interacting serine-threonine protein kinases AT2G30360 63.134 0.0 544
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Lapu8g01852 Pkinase 2e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g01852 - - gmx:100815088 699.893