Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g01843 ATGGCACTCCATGCATCTTCTTTTATGCGACTTATTCTCCTTTTTATCCACGTTGACATGCACTTGAAAGGTGCCTTTGCTGACTATGGAGGTTGGGAGGGTGGTCATGCTACTTTTTATGGTGGTGGTGATGCTTCTGGCACAATGGGAGGTGCATGTGGATACGGGAATTTGTACAGTCAGGGATATGGAACTAACACTGCAGCTCTAAGCACTGCTTTGTTCAACAATGGCTTGAGTTGTGGGGCATGTTTTGAAATGAGGTGTGATGATGACCCAAGATGGTGCAAGCCTGGCACCATTGTTGTTACTGCTACAAACTTCTGTCCTCCAAACTTTGCTTTGCCTAACAATAATGGTGGTTGGTGCAACCCTCCTCTACAACACTTTGATATGGCAGAACCAGCCTTCCTTCAAATTGCTCAATATAGAGCTGGAATTGTGCCTGTGGCGTTTAGAAGGGTGCCTTGTGTGAAAAAGGGAGGAATAAGGTTCACAATTAATGGACACTCTTACTTCAACCTGGTTTTGATCACCAACGTCGCGGGTGCAGGGGATGTCCATGCAGTCTCCATCAAAGGGTCCAGAACTAGCTGGCAACCCATGTCAAGAAACTGGGGACAAAATTGGCAGAGCAACTCCATCCTCAACGGACAAAGCCTCTCTTTTCAAGTCACCGCTAGTGACGGTAGAACTGTGACAGCCTTCAACGTGGCACCAAATAACTGGCAGTTTGGCCAAACCTTCCAAGGGGATCAGTTTTAG 765 0.4693 MALHASSFMRLILLFIHVDMHLKGAFADYGGWEGGHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEMRCDDDPRWCKPGTIVVTATNFCPPNFALPNNNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPVAFRRVPCVKKGGIRFTINGHSYFNLVLITNVAGAGDVHAVSIKGSRTSWQPMSRNWGQNWQSNSILNGQSLSFQVTASDGRTVTAFNVAPNNWQFGQTFQGDQF* 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g01843 254 FunFam Expansin 162 254 - -
Lapu8g01843 254 PANTHER EXPANSIN-A15 11 254 IPR002963 GO:0009664
Lapu8g01843 254 Gene3D - 162 254 IPR036749 -
Lapu8g01843 254 PRINTS Expansin signature 161 173 IPR002963 GO:0009664
Lapu8g01843 254 PRINTS Expansin signature 62 76 IPR002963 GO:0009664
Lapu8g01843 254 PRINTS Expansin signature 101 111 IPR002963 GO:0009664
Lapu8g01843 254 PRINTS Expansin signature 137 150 IPR002963 GO:0009664
Lapu8g01843 254 PRINTS Expansin signature 173 194 IPR002963 GO:0009664
Lapu8g01843 254 PRINTS Expansin signature 89 100 IPR002963 GO:0009664
Lapu8g01843 254 PRINTS Expansin signature 208 229 IPR002963 GO:0009664
Lapu8g01843 254 PRINTS Expansin signature 237 253 IPR002963 GO:0009664
Lapu8g01843 254 PRINTS Expansin signature 120 137 IPR002963 GO:0009664
Lapu8g01843 254 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 50 162 IPR007112 -
Lapu8g01843 254 CDD DPBB_EXPA_N 31 157 - -
Lapu8g01843 254 Gene3D - 17 157 IPR036908 -
Lapu8g01843 254 SUPERFAMILY Barwin-like endoglucanases 31 180 IPR036908 -
Lapu8g01843 254 PRINTS Expansin/Lol pI family signature 49 67 IPR007118 GO:0005576
Lapu8g01843 254 PRINTS Expansin/Lol pI family signature 237 251 IPR007118 GO:0005576
Lapu8g01843 254 PRINTS Expansin/Lol pI family signature 31 46 IPR007118 GO:0005576
Lapu8g01843 254 PRINTS Expansin/Lol pI family signature 145 161 IPR007118 GO:0005576
Lapu8g01843 254 PRINTS Expansin/Lol pI family signature 199 213 IPR007118 GO:0005576
Lapu8g01843 254 PRINTS Expansin/Lol pI family signature 71 89 IPR007118 GO:0005576
Lapu8g01843 254 FunFam Expansin 20 158 - -
Lapu8g01843 254 SUPERFAMILY PHL pollen allergen 159 251 IPR036749 -
Lapu8g01843 254 Pfam Expansin C-terminal domain 163 240 IPR007117 -
Lapu8g01843 254 SMART dpbb_1 67 152 IPR007112 -
Lapu8g01843 254 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 172 251 IPR007117 -
Lapu8g01843 254 Pfam Lytic transglycolase 67 151 IPR009009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g01843 Lapu-Chr8 35693784 35695626 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g01843 3 254 Expansin Gene Family AT2G40610 77.470 1.25e-148 413
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g01843 - - gmx:100816848 476.863