Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g01840 ATGGAGGTCGAGGTTTGCATGAACGGTGCGTGCAAGAATGGCTATGCGAGAGAGTGGAAGAAAGGGTGGCCTCTGCGATCGGGTGGATTCGCCAGGCTCTGCGATAAGTGCGGATCTGCCTATTCCAATTCAATATTCTGTGAAAAATTTCACCTGCATCAAACTGGGTGGAGAGAGTGCGACTTTTGCAACAAGTCTATCCACTGTGGATGCATAATATCAAGGTTTTCTTTTGAGTACCTTGATTTTGGAGGTATAGGTTGCACAACCTGTCTAAAGGCTTCCCAACGTCCTTTGATACAGGAGACTGGAAACTCTATTAGATCTATTAGATCAATAAAAAATAATGCAAGCGATCGTCATACTGAACATATTGATGATAGACTATTCGTTGATGGTTCTAGCAAAAGAAAACTTATGCACATGCGTAGAATTGCTGATGGTAGAGAATCCAACCATTGGCCTCAAGCTAAGAGAGATGACATAGATTCATATATTGATCTAAACAGGGAAGACAGGAGATTTTCAAATGTGATGAAACCGTCTAATCATTCGTTAAAATTTACTCCATTAGAAAATAATAGACCAACATGGGAAGCTAGAGGTATGCACAGATCAAGTTCATTGAATATTTCTCTGGGAGCCTCATCAGGAAACTCTGTCCTACCTTCTGCTCTAGAGATTGTAGAAGGGAGATTTGAGGGCAAAACATCATCTTCTTGCTTTCATCAAGGCCAAAGATCTCTCTCCATAATGCCTAAACCATTGATGAATGCAATGACCATAAATATGGAAACCAGCAATGGCATGATTTCTCAAGAACGCGTTGCACGGCCACCTACTGATGGGAAAGGCAAAAATATGTTACTTTCTCGATACTGGCCTAGGATTACTGATCAAGAACTTCAGCAATTATCCGGAGATTTGAAGTCTACTATAGTGCCTTTATTTGAGAAGGTACTGAGTGCCAGTGATGCAGGTCGAATTGGTCGTCTTGTTCTCCCAAAATCTTGCGCCGAGGCTTACTTTCCTCCTATTTCACAATCAGAAGGTCTTCCTTTGCATATGAAAGATGTGAAGGGAAATGAGTGGACATTTCAGTTTAGATTTTGGCCTAATAACAACAGTAGGATGTATGTATTAGAGGGAGTAACCCCTTGCATACAGGCCTTGCAATTAAATGCTGGCGACATTGTGATATTTAGTCGGATAGATCCTGGAGGCAAATTTGTTTTGGGTTTTAGGAGGGCATCAGATTCTGTAGATACACAGGAAGCCTCTGCTGCTCATTCCAATGTTTTTAAGGAAACAACCTTTTCTGGTGCAACTGCAAATATGCACTCAGGAAATAGTTATCGTGATCTTCTCCAGACAAGGAAAGGGAATGGTGATCCTTATTTAAATAGATGTTCGGAGCATTTCCGTTTGGGTACTGGAATTGCTGATTGTCTTCAAACTAAAAATTTTGAGATGGTAAACAATGATTTGGTGCAACTACCAATTTCAGTTTCAGAGAAGACTCAAAATATTGGGCCTATGTGTAAGAGGTTGCTAATACATAATGAAGATGCCATGGAGTTGAGAGTTACATGGGAAGAAGCTCAGGACTTGCTTTGTCCGGCGCCTAGTGTCAAGCCCAGTATTGTAACTATTGAGGACCAAGAATTTGAGGAATATGAGGAACCCCCAGTTTTTGGAAAGAGAACTACAGTGAATGCTCATTCATCTGGGTCTTTGAGCTTTGCATCAGAGGAAATGGGTCCAAAGGAATTAGATAATGTTCCGGTAACCAGTAAAGATTCTAAAAAGCGAAGAATTATGGAAAAAGCCAAGTCAATTCTAGAACAAGAGCCATATGGCTTAAATGAACTACTCAGTGCAAAGGTTTTGGATGATGATCTTGTTGACCCTGGTGATTCATCAGCTGGAGCCACCACCAAACATCCAAGGCACCGTTGTGGATGCACTTGCGTTGTGTGCATTCAACCACCAAGTGGAAAAGGGAGACACAGAACAACATGCACTTGCCCTTCCTGCATCACTGTGAAACGCCGTTTGGACACCCTTATGACGCGTAAGAAACAACGCCAATCAGAACGTGAAGCAGATGATACCCAGAAAGATCGCATGTATCACGAAGGGATGAACTCAGTGCAGGACAAATAG 2166 0.4183 MEVEVCMNGACKNGYAREWKKGWPLRSGGFARLCDKCGSAYSNSIFCEKFHLHQTGWRECDFCNKSIHCGCIISRFSFEYLDFGGIGCTTCLKASQRPLIQETGNSIRSIRSIKNNASDRHTEHIDDRLFVDGSSKRKLMHMRRIADGRESNHWPQAKRDDIDSYIDLNREDRRFSNVMKPSNHSLKFTPLENNRPTWEARGMHRSSSLNISLGASSGNSVLPSALEIVEGRFEGKTSSSCFHQGQRSLSIMPKPLMNAMTINMETSNGMISQERVARPPTDGKGKNMLLSRYWPRITDQELQQLSGDLKSTIVPLFEKVLSASDAGRIGRLVLPKSCAEAYFPPISQSEGLPLHMKDVKGNEWTFQFRFWPNNNSRMYVLEGVTPCIQALQLNAGDIVIFSRIDPGGKFVLGFRRASDSVDTQEASAAHSNVFKETTFSGATANMHSGNSYRDLLQTRKGNGDPYLNRCSEHFRLGTGIADCLQTKNFEMVNNDLVQLPISVSEKTQNIGPMCKRLLIHNEDAMELRVTWEEAQDLLCPAPSVKPSIVTIEDQEFEEYEEPPVFGKRTTVNAHSSGSLSFASEEMGPKELDNVPVTSKDSKKRRIMEKAKSILEQEPYGLNELLSAKVLDDDLVDPGDSSAGATTKHPRHRCGCTCVVCIQPPSGKGRHRTTCTCPSCITVKRRLDTLMTRKKQRQSEREADDTQKDRMYHEGMNSVQDK* 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g01840 721 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 4 712 - -
Lapu8g01840 721 Gene3D - 295 422 IPR015300 -
Lapu8g01840 721 Pfam B3 DNA binding domain 317 417 IPR003340 GO:0003677
Lapu8g01840 721 SMART B3_2 317 418 IPR003340 GO:0003677
Lapu8g01840 721 FunFam B3 domain-containing transcription repressor VAL1 295 422 - -
Lapu8g01840 721 SUPERFAMILY DNA-binding pseudobarrel domain 314 416 IPR015300 -
Lapu8g01840 721 ProSiteProfiles B3 DNA-binding domain profile. 317 418 IPR003340 GO:0003677
Lapu8g01840 721 CDD B3_DNA 315 416 IPR003340 GO:0003677
Lapu8g01840 721 MobiDBLite consensus disorder prediction 690 721 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g01840 Lapu-Chr8 35667779 35675001 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu8g01840 1 721 B3 DNA Binding Superfamily AT2G30470 43.839 0.0 550
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lapu8g01840 B3 4e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g01840 K09287 - vra:106763363 1151.35